Basic Information
Gene Model:Bol015427
Gene Family:Not classificated
Chromosome:C03
Scaffold:Scaffold000165
Sequence:
 | 
Gene Structure
Nucleotide Length:1858 bp
Transcript Length:849 bp
Protein Length:282 aa
Strand:-
Location:C03: 930967 : 932824
Gene CDSs(4): 1-226 | 426-571 | 780-1030 | 1633-1858 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPantherPTHR19957SYNTAXIN 5 264 2.5e-74Not foundNot found
HMMPantherPTHR19957:SF3SYNTAXIN 5 5 264 2.5e-74Not foundNot found
Gene3DG3DSA:1.20.1050.30no description 46 271 6.9e-15Not foundNot found
superfamilySSF47661t-snare proteins 46 271 7.9e-28IPR010989t-SNARE
Segsegseg 38 50 NANot foundNot found
Segsegseg 188 207 NANot foundNot found
HMMPfamPF05739SNARE 239 271 5.8e-07IPR000727Target SNARE coiled-coil region
HMMPfamPF00804Syntaxin 48 154 2.3e-17IPR006011Syntaxin, N-terminal
ProfileScanPS50192T_SNARE 234 271 9.158IPR000727Target SNARE coiled-coil region
Gene Ontology
GO TermGO TypeDescription
GO:0005515 Molecular Function protein binding
GO:0016020 Cellular Component membrane
GO:0016192 Biological Process vesicle-mediated transport
Swiss-Prot
Best HitE_value Description
Q9FFK11e-115SYP31_ARATH Syntaxin-31 OS=Arabidopsis thaliana GN=SYP31 PE=1 SV=1
TrEMBL
Best HitE_value Description
C6TGZ31e-93C6TGZ3_SOYBN Putative uncharacterized protein OS=Glycine max PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT5G057601e-115K08490STX5syntaxin 5
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL13076(6 genes,6 taxa):Arabidopsis thalianaAT5G05760.1
ORTHOMCL13076(6 genes,6 taxa):Brassica oleraceaBol015427
ORTHOMCL13076(6 genes,6 taxa):Brassica rapaBra005866
ORTHOMCL13076(6 genes,6 taxa):Vitis viniferaGSVIVT01032856001
ORTHOMCL13076(6 genes,6 taxa):Populus trichocarpaPOPTR_0010s19850.1
ORTHOMCL13076(6 genes,6 taxa):Carica papayaevm.TU.supercontig_19.206
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:805..1974904 (+)A.thalianaChr5:386018..3364596 (+)286
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:767150..1781501 (+)B.rapaA10:2400264..3680955 (+)76
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
RAT5G0576017288931731021Chr5Subgenome_II626
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


logo