Basic Information
Gene Model:Bol015318
Gene Family:Sulfurtransferasese/Rhodanese Gene Family
Chromosome:C03
Scaffold:Scaffold000165
Sequence:
 | 
Gene Structure
Nucleotide Length:1030 bp
Transcript Length:396 bp
Protein Length:131 aa
Strand:+
Location:C03: 299708 : 300737
Gene CDSs(3): 1-86 | 324-462 | 860-1030 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMSmartSM00450no description 9 117 1.3e-09IPR001763Rhodanese-like
Gene3DG3DSA:3.40.250.10no description 2 131 7.9e-47IPR001763Rhodanese-like
superfamilySSF52821Rhodanese/Cell cycle 2 131 3.1e-29IPR001763Rhodanese-like
ProfileScanPS50206RHODANESE_3 19 120 15.294IPR001763Rhodanese-like
Gene Ontology
GO TermGO TypeDescription

Note: this gene was not detected its best hit in Swiss-Prot database.

Swiss-Prot
Best HitE_value Description
Q8GY312e-70CDC25_ARATH Dual specificity phosphatase Cdc25 OS=Arabidopsis thaliana GN=CDC25 PE=1 SV=1
TrEMBL
Best HitE_value Description
C6SWM71e-54C6SWM7_SOYBN Putative uncharacterized protein OS=Glycine max PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL10412(8 genes,8 taxa):Arabidopsis thalianaAT5G03455.1
ORTHOMCL10412(8 genes,8 taxa):Brassica oleraceaBol015318
ORTHOMCL10412(8 genes,8 taxa):Brassica rapaBra005765
ORTHOMCL10412(8 genes,8 taxa):Vitis viniferaGSVIVT01033661001
ORTHOMCL10412(8 genes,8 taxa):Oryza sativaOs03t0108000-01
ORTHOMCL10412(8 genes,8 taxa):Populus trichocarpaPOPTR_0006s12460.1
ORTHOMCL10412(8 genes,8 taxa):Sorghum bicolorSb01g050100.1
ORTHOMCL10412(8 genes,8 taxa):Carica papayaevm.TU.supercontig_456.2
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:805..1974904 (+)A.thalianaChr5:386018..3364596 (+)286
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:805..763338 (+)B.rapaA10:3696620..4669379 (-)83
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
RAT5G03455862559864108Chr5Subgenome_II626
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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