Basic Information
Gene Model:Bol015266
Gene Family:Amino Acid/Auxin Permease AAAP Family
Chromosome:C03
Scaffold:Scaffold000165
Sequence:
 | 
Gene Structure
Nucleotide Length:2728 bp
Transcript Length:1515 bp
Protein Length:504 aa
Strand:+
Location:C03: 64633 : 67360
Gene CDSs(10): 1-149 | 249-520 | 669-883 | 971-994 | 1118-1298 | 1372-1591 | 1682-1817 | 1908-2066 | 2325-2387 | 2633-2728 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF01490Aa_trans 130 451 1.6e-54IPR013057Amino acid transporter, transmembrane
Segsegseg 408 426 NANot foundNot found
Segsegseg 442 454 NANot foundNot found
Segsegseg 76 91 NANot foundNot found
Segsegseg 160 174 NANot foundNot found
Segsegseg 297 314 NANot foundNot found
HMMPantherPTHR22950AMINO ACID TRANSPORT 121 500 7.7e-97Not foundNot found
Gene Ontology
GO TermGO TypeDescription

Note: this gene was not detected its best hit in Swiss-Prot database.

Swiss-Prot
Best HitE_value Description
P470821e-37AVT1_YEAST Vacuolar amino acid transporter 1 OS=Saccharomyces cerevisiae GN=AVT1 PE=1 SV=1
TrEMBL
Best HitE_value Description
Q8LPF40.0Q8LPF4_ARATH AT5g02170/T7H20_220 OS=Arabidopsis thaliana GN=At5g02170 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
dha:DEHA2D16940g6e-18K14209SLC36A1, PAT1solute carrier family 36 (proton-coupled amino acid transporter), member 1
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL3827(12 genes,4 taxa):Arabidopsis thalianaAT3G09330.1
ORTHOMCL3827(12 genes,4 taxa):Arabidopsis thalianaAT3G09340.1
ORTHOMCL3827(12 genes,4 taxa):Arabidopsis thalianaAT5G02170.1
ORTHOMCL3827(12 genes,4 taxa):Arabidopsis thalianaAT5G02180.1
ORTHOMCL3827(12 genes,4 taxa):Brassica oleraceaBol002397
ORTHOMCL3827(12 genes,4 taxa):Brassica oleraceaBol015265
ORTHOMCL3827(12 genes,4 taxa):Brassica oleraceaBol015266
ORTHOMCL3827(12 genes,4 taxa):Brassica oleraceaBol033920
ORTHOMCL3827(12 genes,4 taxa):Brassica rapaBra001315
ORTHOMCL3827(12 genes,4 taxa):Brassica rapaBra005712
ORTHOMCL3827(12 genes,4 taxa):Brassica rapaBra009608
ORTHOMCL3827(12 genes,4 taxa):Populus trichocarpaPOPTR_0016s10570.1
Tandem Duplication
ClusterGene Num.Gene List
Cluster_8912Bol015265 Bol015266 
Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:805..1974904 (+)A.thalianaChr5:386018..3364596 (+)286
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:805..763338 (+)B.rapaA10:3696620..4669379 (-)83
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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