Basic Information
Gene Model:Bol015195
Gene Family:Not classificated
Chromosome:C02
Scaffold:Scaffold000167
Sequence:
 | 
Gene Structure
Nucleotide Length:2190 bp
Transcript Length:2190 bp
Protein Length:729 aa
Strand:+
Location:C02: 35751415 : 35753604
Gene CDSs(1): 1-2190 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF02225PA 361 440 1.1e-07IPR003137Protease-associated PA
HMMPfamPF05922Inhibitor_I9 23 101 8.7e-18IPR010259Proteinase inhibitor I9, subtilisin propeptide
HMMPfamPF00082Peptidase_S8 108 569 1.6e-28IPR000209Peptidase S8/S53, subtilisin/kexin/sedolisin
Gene3DG3DSA:3.40.50.200no description 117 576 1.5e-72IPR000209Peptidase S8/S53, subtilisin/kexin/sedolisin
HMMPantherPTHR10795SUBTILISIN/KEXIN-REL 21 710 3e-246IPR015500Peptidase S8, subtilisin-related
HMMPantherPTHR10795:SF17SUBTILISIN-LIKE PROT 21 710 3e-246Not foundNot found
PatternScanPS00136SUBTILASE_ASP 129 140 NAIPR000209Peptidase S8/S53, subtilisin/kexin/sedolisin
PatternScanPS00138SUBTILASE_SER 520 530 NAIPR000209Peptidase S8/S53, subtilisin/kexin/sedolisin
Segsegseg 267 289 NANot foundNot found
Segsegseg 438 447 NANot foundNot found
superfamilySSF54897Protease propeptides 20 101 7.7e-06IPR009020Proteinase inhibitor, propeptide
superfamilySSF52743Subtilisin-like 83 582 5.1e-77IPR000209Peptidase S8/S53, subtilisin/kexin/sedolisin
Gene Ontology
GO TermGO TypeDescription
GO:0004252 Molecular Function serine-type endopeptidase activity
GO:0006508 Biological Process proteolysis
GO:0042802 Molecular Function identical protein binding
GO:0043086 Biological Process negative regulation of catalytic activity
Swiss-Prot
Best HitE_value Description
O653511e-127SUBL_ARATH Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1
TrEMBL
Best HitE_value Description
Q9FHA40.0Q9FHA4_ARATH Subtilisin-type protease-like OS=Arabidopsis thaliana GN=At5g67090 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ddi:DDB_G02823977e-08K08653MBTPS1membrane-bound transcription factor site-1 protease
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL4242(12 genes,7 taxa):Arabidopsis thalianaAT5G67090.1
ORTHOMCL4242(12 genes,7 taxa):Brassica oleraceaBol015195
ORTHOMCL4242(12 genes,7 taxa):Brassica rapaBra026561
ORTHOMCL4242(12 genes,7 taxa):Oryza sativaOs01t0868800-00
ORTHOMCL4242(12 genes,7 taxa):Oryza sativaOs01t0868900-01
ORTHOMCL4242(12 genes,7 taxa):Oryza sativaOs01t0868900-02
ORTHOMCL4242(12 genes,7 taxa):Populus trichocarpaPOPTR_0002s12610.1
ORTHOMCL4242(12 genes,7 taxa):Populus trichocarpaPOPTR_0007s10900.1
ORTHOMCL4242(12 genes,7 taxa):Populus trichocarpaPOPTR_0014s02630.1
ORTHOMCL4242(12 genes,7 taxa):Populus trichocarpaPOPTR_0014s02650.1
ORTHOMCL4242(12 genes,7 taxa):Sorghum bicolorSb09g021490.1
ORTHOMCL4242(12 genes,7 taxa):Carica papayaevm.TU.supercontig_21.178
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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