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Basic Information

Gene Model:

Bol015054

Gene Family:

Amino Acid/Auxin Permease AAAP Family

Chromosome:

C03

Scaffold:

Scaffold000168

Sequence:

|

Gene Structure

Nucleotide Length:

1221 bp

Transcript Length:

1221 bp

Protein Length:

406 aa

Strand:

-

Location:

C03: 14739333 : 14740553

Gene CDSs(1):

1-1221 |

Protein Sequence Features

Interpro

Database	Terms	Identifier	Start	End	E-value	InterPro ID	Description
HMMPfam	PF01490	Aa_trans	16	397	9e-72	IPR013057	Amino acid transporter, transmembrane
HMMPanther	PTHR22950	AMINO ACID TRANSPORT	4	399	8.3e-102	Not found	Not found
Seg	seg	seg	317	334	NA	Not found	Not found

Gene Ontology

GO Term	GO Type	Description
Note: this gene was not detected its best hit in Swiss-Prot database.

Swiss-Prot

Best Hit	E_value	Description
Q495N2	1e-37	S36A3_HUMAN Proton-coupled amino acid transporter 3 OS=Homo sapiens GN=SLC36A3 PE=1 SV=2

TrEMBL

Best Hit	E_value	Description
Q8GXJ5	0.0	Q8GXJ5_ARATH Putative uncharacterized protein OS=Arabidopsis thaliana PE=2 SV=1

KEGG

Best Hit	E_value	KO	EC or Symbol	Description
ath:AT4G38250	1e-180	K14209	SLC36A1, PAT1	solute carrier family 36 (proton-coupled amino acid transporter), member 1

Gene Cluster

Orthologs

OrthoMCL Group	Species	Gene List
ORTHOMCL805(22 genes,8 taxa):	Arabidopsis thaliana	AT2G42005.1
ORTHOMCL805(22 genes,8 taxa):	Arabidopsis thaliana	AT4G38250.1
ORTHOMCL805(22 genes,8 taxa):	Brassica oleracea	Bol000902
ORTHOMCL805(22 genes,8 taxa):	Brassica oleracea	Bol015054
ORTHOMCL805(22 genes,8 taxa):	Brassica rapa	Bra000591
ORTHOMCL805(22 genes,8 taxa):	Brassica rapa	Bra033558
ORTHOMCL805(22 genes,8 taxa):	Vitis vinifera	GSVIVT01022294001
ORTHOMCL805(22 genes,8 taxa):	Oryza sativa	Os02t0670900-01
ORTHOMCL805(22 genes,8 taxa):	Oryza sativa	Os02t0670900-02
ORTHOMCL805(22 genes,8 taxa):	Oryza sativa	Os02t0670900-03
ORTHOMCL805(22 genes,8 taxa):	Oryza sativa	Os02t0670900-04
ORTHOMCL805(22 genes,8 taxa):	Oryza sativa	Os02t0670900-05
ORTHOMCL805(22 genes,8 taxa):	Oryza sativa	Os04t0565500-01
ORTHOMCL805(22 genes,8 taxa):	Oryza sativa	Os04t0565500-02
ORTHOMCL805(22 genes,8 taxa):	Oryza sativa	Os04t0565500-03
ORTHOMCL805(22 genes,8 taxa):	Populus trichocarpa	POPTR_0004s21660.1
ORTHOMCL805(22 genes,8 taxa):	Populus trichocarpa	POPTR_0005s10530.1
ORTHOMCL805(22 genes,8 taxa):	Populus trichocarpa	POPTR_0009s16910.1
ORTHOMCL805(22 genes,8 taxa):	Sorghum bicolor	Sb04g032170.1
ORTHOMCL805(22 genes,8 taxa):	Sorghum bicolor	Sb06g025470.1
ORTHOMCL805(22 genes,8 taxa):	Sorghum bicolor	Sb06g025480.1
ORTHOMCL805(22 genes,8 taxa):	Carica papaya	evm.TU.supercontig_6.354

Tandem Duplication

Cluster	Gene Num.	Gene List
The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis

Synteny Genes

Compared to A.thaliana

Compared to B.rapa

Synteny Regions

Species	Region	Mapped Species	Mapped Region	Num. of Genewise
Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

Species	Region	Mapped Species	Mapped Region	Num. of Genewise
B.oleracea	C03:13895784..16558399 (+)	B.rapa	A03:15447774..16682343 (+)	164

Trplicated Block

Block	Best Hit	Start	END	Chromosome	Subgenome	Num. of Gene Pairs on Block
Note: this gene was no corresponding triplicated genes.

@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.