Basic Information
Gene Model:Bol015021
Gene Family:Transcription Factor Families
Chromosome:C03
Scaffold:Scaffold000168
Sequence:
 | 
Gene Structure
Nucleotide Length:11917 bp
Transcript Length:5967 bp
Protein Length:1988 aa
Strand:+
Location:C03: 14407014 : 14418930
Gene CDSs(15): 1-76 | 720-745 | 1078-1554 | 1645-2224 | 2553-2671 | 3431-3907 | 3990-4418 | 7232-7640 | 7725-7846 | 8229-8726 | 8807-9430 | 9511-10134 | 10215-10838 | 10919-11383 | 11501-11917 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF02362B3 1835 1930 8.3e-28IPR003340Transcriptional factor B3
HMMPfamPF02362B3 1680 1773 5.7e-26IPR003340Transcriptional factor B3
HMMPfamPF02362B3 1472 1565 5.7e-26IPR003340Transcriptional factor B3
HMMPfamPF02362B3 1264 1357 5.7e-26IPR003340Transcriptional factor B3
HMMPfamPF02362B3 890 993 8e-28IPR003340Transcriptional factor B3
HMMPfamPF02362B3 1056 1149 5.7e-26IPR003340Transcriptional factor B3
HMMPfamPF02362B3 570 665 3.7e-35IPR003340Transcriptional factor B3
HMMPfamPF02362B3 713 806 1.1e-22IPR003340Transcriptional factor B3
HMMPfamPF02362B3 411 506 2e-36IPR003340Transcriptional factor B3
HMMPfamPF02362B3 178 273 1.3e-31IPR003340Transcriptional factor B3
HMMPfamPF02362B3 35 114 5.3e-27IPR003340Transcriptional factor B3
Coilcoilcoiled-coil 1798 1819 NANot foundNot found
Coilcoilcoiled-coil 1628 1660 NANot foundNot found
Coilcoilcoiled-coil 1590 1611 NANot foundNot found
Coilcoilcoiled-coil 1382 1403 NANot foundNot found
Coilcoilcoiled-coil 1420 1452 NANot foundNot found
Coilcoilcoiled-coil 1174 1195 NANot foundNot found
Coilcoilcoiled-coil 1212 1244 NANot foundNot found
Coilcoilcoiled-coil 1004 1036 NANot foundNot found
Gene3DG3DSA:2.40.330.10no description 403 507 3.6e-05Not foundNot found
Gene3DG3DSA:2.40.330.10no description 582 649 0.00022Not foundNot found
Gene3DG3DSA:2.40.330.10no description 168 257 0.00031Not foundNot found
Segsegseg 1429 1442 NANot foundNot found
Segsegseg 1637 1650 NANot foundNot found
Segsegseg 1930 1941 NANot foundNot found
Segsegseg 1013 1026 NANot foundNot found
Segsegseg 1221 1234 NANot foundNot found
Segsegseg 670 680 NANot foundNot found
ProfileScanPS50863B3 1835 1930 12.562IPR003340Transcriptional factor B3
ProfileScanPS50863B3 1264 1357 12.971IPR003340Transcriptional factor B3
ProfileScanPS50863B3 1472 1565 12.971IPR003340Transcriptional factor B3
ProfileScanPS50863B3 1680 1773 12.971IPR003340Transcriptional factor B3
ProfileScanPS50863B3 896 992 13.352IPR003340Transcriptional factor B3
ProfileScanPS50863B3 1056 1149 12.971IPR003340Transcriptional factor B3
ProfileScanPS50863B3 570 665 15.763IPR003340Transcriptional factor B3
ProfileScanPS50863B3 713 806 11.829IPR003340Transcriptional factor B3
ProfileScanPS50863B3 36 114 12.717IPR003340Transcriptional factor B3
ProfileScanPS50863B3 178 273 15.256IPR003340Transcriptional factor B3
ProfileScanPS50863B3 411 506 13.944IPR003340Transcriptional factor B3
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
P0CAP51e-179REM13_ARATH B3 domain-containing protein REM13 OS=Arabidopsis thaliana GN=REM13 PE=2 SV=1
TrEMBL
Best HitE_value Description
Q8S8E81e-147Q8S8E8_ARATH Putative uncharacterized protein At2g24690 OS=Arabidopsis thaliana GN=At2g24690 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL15458(4 genes,3 taxa):Arabidopsis thalianaAT2G24690.1
ORTHOMCL15458(4 genes,3 taxa):Brassica oleraceaBol015021
ORTHOMCL15458(4 genes,3 taxa):Brassica rapaBra000563
ORTHOMCL15458(4 genes,3 taxa):Brassica rapaBra000564
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:13895784..16558399 (+)B.rapaA03:15447774..16682343 (+)164
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
IAT2G246901049955110503140Chr2Subgenome_II25
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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