Basic Information
Gene Model:Bol014951
Gene Family:Protein Kinase Gene Families
Chromosome:C01
Scaffold:Scaffold000169
Sequence:
 | 
Gene Structure
Nucleotide Length:2638 bp
Transcript Length:1986 bp
Protein Length:661 aa
Strand:-
Location:C01: 9733075 : 9735712
Gene CDSs(8): 1-742 | 889-1008 | 1097-1159 | 1248-1369 | 1442-1655 | 1742-1979 | 2057-2210 | 2306-2638 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF00069Pkinase 333 533 6.1e-44IPR017442Serine/threonine-protein kinase-like domain
HMMPfamPF01657DUF26 183 235 3.8e-20IPR002902Protein of unknown function DUF26
HMMPfamPF01657DUF26 68 124 3.6e-14IPR002902Protein of unknown function DUF26
Gene3DG3DSA:1.10.510.10no description 408 608 5.8e-49Not foundNot found
Gene3DG3DSA:3.30.200.20no description 314 408 5.8e-25Not foundNot found
superfamilySSF56112Protein kinase-like 303 614 8.4e-82IPR011009Protein kinase-like domain
Segsegseg 256 270 NANot foundNot found
PatternScanPS00108PROTEIN_KINASE_ST 455 467 NAIPR008271Serine/threonine-protein kinase, active site
PatternScanPS00107PROTEIN_KINASE_ATP 339 361 NAIPR017441Protein kinase, ATP binding site
HMMSmartSM00219no description 333 606 5.5e-29IPR020635Tyrosine-protein kinase, subgroup, catalytic domain
HMMSmartSM00220no description 333 606 1.9e-30IPR002290Serine/threonine-protein kinase domain
ProfileScanPS50011PROTEIN_KINASE_DOM 333 611 37.983IPR000719Protein kinase, catalytic domain
HMMPantherPTHR23258SERINE-THREONINE PRO 182 661 1.5e-279Not foundNot found
HMMPantherPTHR23258:SF430SERINE/THREONINE REC 182 661 1.5e-279Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0004672 Molecular Function protein kinase activity
GO:0004674 Molecular Function protein serine/threonine kinase activity
GO:0005524 Molecular Function ATP binding
GO:0006468 Biological Process protein phosphorylation
Swiss-Prot
Best HitE_value Description
O654830.0CRK24_ARATH Cysteine-rich receptor-like protein kinase 24 OS=Arabidopsis thaliana GN=CRK24 PE=2 SV=2
TrEMBL
Best HitE_value Description
B9RXT41e-157B9RXT4_RICCO ATP binding protein, putative OS=Ricinus communis GN=RCOM_0906040 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
osa:43339124e-56K00924E2.7.1.---
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL172(47 genes,5 taxa):Arabidopsis thalianaAT4G11460.1
ORTHOMCL172(47 genes,5 taxa):Arabidopsis thalianaAT4G11470.1
ORTHOMCL172(47 genes,5 taxa):Arabidopsis thalianaAT4G11480.1
ORTHOMCL172(47 genes,5 taxa):Arabidopsis thalianaAT4G11490.1
ORTHOMCL172(47 genes,5 taxa):Arabidopsis thalianaAT4G11530.1
ORTHOMCL172(47 genes,5 taxa):Arabidopsis thalianaAT4G23190.1
ORTHOMCL172(47 genes,5 taxa):Arabidopsis thalianaAT4G23200.1
ORTHOMCL172(47 genes,5 taxa):Arabidopsis thalianaAT4G23210.3
ORTHOMCL172(47 genes,5 taxa):Arabidopsis thalianaAT4G23220.1
ORTHOMCL172(47 genes,5 taxa):Arabidopsis thalianaAT4G23240.1
ORTHOMCL172(47 genes,5 taxa):Arabidopsis thalianaAT4G23250.1
ORTHOMCL172(47 genes,5 taxa):Arabidopsis thalianaAT4G23260.1
ORTHOMCL172(47 genes,5 taxa):Arabidopsis thalianaAT4G23290.2
ORTHOMCL172(47 genes,5 taxa):Arabidopsis thalianaAT4G23300.1
ORTHOMCL172(47 genes,5 taxa):Brassica oleraceaBol010655
ORTHOMCL172(47 genes,5 taxa):Brassica oleraceaBol014947
ORTHOMCL172(47 genes,5 taxa):Brassica oleraceaBol014950
ORTHOMCL172(47 genes,5 taxa):Brassica oleraceaBol014951
ORTHOMCL172(47 genes,5 taxa):Brassica oleraceaBol014956
ORTHOMCL172(47 genes,5 taxa):Brassica oleraceaBol014957
ORTHOMCL172(47 genes,5 taxa):Brassica oleraceaBol029930
ORTHOMCL172(47 genes,5 taxa):Brassica oleraceaBol040345
ORTHOMCL172(47 genes,5 taxa):Brassica rapaBra000744
ORTHOMCL172(47 genes,5 taxa):Brassica rapaBra000746
ORTHOMCL172(47 genes,5 taxa):Brassica rapaBra012706
ORTHOMCL172(47 genes,5 taxa):Brassica rapaBra013199
ORTHOMCL172(47 genes,5 taxa):Brassica rapaBra013657
ORTHOMCL172(47 genes,5 taxa):Brassica rapaBra013659
ORTHOMCL172(47 genes,5 taxa):Brassica rapaBra013660
ORTHOMCL172(47 genes,5 taxa):Brassica rapaBra013679
ORTHOMCL172(47 genes,5 taxa):Brassica rapaBra013682
ORTHOMCL172(47 genes,5 taxa):Brassica rapaBra013684
ORTHOMCL172(47 genes,5 taxa):Brassica rapaBra019314
ORTHOMCL172(47 genes,5 taxa):Brassica rapaBra019315
ORTHOMCL172(47 genes,5 taxa):Brassica rapaBra019316
ORTHOMCL172(47 genes,5 taxa):Brassica rapaBra019317
ORTHOMCL172(47 genes,5 taxa):Brassica rapaBra020820
ORTHOMCL172(47 genes,5 taxa):Brassica rapaBra020827
ORTHOMCL172(47 genes,5 taxa):Brassica rapaBra020828
ORTHOMCL172(47 genes,5 taxa):Brassica rapaBra027990
ORTHOMCL172(47 genes,5 taxa):Brassica rapaBra032711
ORTHOMCL172(47 genes,5 taxa):Brassica rapaBra035217
ORTHOMCL172(47 genes,5 taxa):Brassica rapaBra035218
ORTHOMCL172(47 genes,5 taxa):Brassica rapaBra035221
ORTHOMCL172(47 genes,5 taxa):Brassica rapaBra035222
ORTHOMCL172(47 genes,5 taxa):Vitis viniferaGSVIVT01005168001
ORTHOMCL172(47 genes,5 taxa):Carica papayaevm.TU.supercontig_81.18
Tandem Duplication
ClusterGene Num.Gene List
Cluster_1454Bol014948 Bol014949 Bol014950 Bol014951 
Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:7418478..14237322 (+)A.thalianaChr4:11126151..13975908 (+)479
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:6342073..14237322 (+)B.rapaA03:5412561..8949158 (-)286
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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