Basic Information
Gene Model:Bol014891
Gene Family:Not classificated
Chromosome:C02
Scaffold:Scaffold000170
Sequence:
 | 
Gene Structure
Nucleotide Length:1470 bp
Transcript Length:990 bp
Protein Length:329 aa
Strand:+
Location:C02: 33623821 : 33625290
Gene CDSs(7): 1-127 | 211-362 | 437-601 | 665-887 | 965-1081 | 1178-1243 | 1331-1470 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
superfamilySSF103481Multidrug resistance 198 310 1.3e-08Not foundNot found
superfamilySSF103481Multidrug resistance 29 141 1.4e-05Not foundNot found
HMMPfamPF00892DUF6 4 138 9.5e-10IPR000620Protein of unknown function DUF6, transmembrane
Segsegseg 10 21 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0016020 Cellular Component membrane
Swiss-Prot
Best HitE_value Description
Q6J1633e-275NG4_PINTA Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1
TrEMBL
Best HitE_value Description
Q2A9N90.0Q2A9N9_BRAOL Integral membrane protein, putative OS=Brassica oleracea GN=26.t00028 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL6816(10 genes,7 taxa):Arabidopsis thalianaAT5G47470.1
ORTHOMCL6816(10 genes,7 taxa):Brassica oleraceaBol014891
ORTHOMCL6816(10 genes,7 taxa):Brassica rapaBra022134
ORTHOMCL6816(10 genes,7 taxa):Oryza sativaOs06t0105700-01
ORTHOMCL6816(10 genes,7 taxa):Populus trichocarpaPOPTR_0001s15780.1
ORTHOMCL6816(10 genes,7 taxa):Populus trichocarpaPOPTR_0001s15780.2
ORTHOMCL6816(10 genes,7 taxa):Populus trichocarpaPOPTR_0003s07500.1
ORTHOMCL6816(10 genes,7 taxa):Sorghum bicolorSb07g003790.1
ORTHOMCL6816(10 genes,7 taxa):Sorghum bicolorSb10g000580.1
ORTHOMCL6816(10 genes,7 taxa):Carica papayaevm.TU.supercontig_29.161
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:32283719..33865715 (+)A.thalianaChr5:19005601..19350669 (+)46
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:33488815..35657148 (+)B.rapaA09:28432281..29294698 (-)42
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
VAT5G474701925459819256378Chr5Subgenome_I41
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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