Basic Information
Gene Model:Bol014775
Gene Family:Not classificated
Chromosome:C01
Scaffold:Scaffold000171
Sequence:
 | 
Gene Structure
Nucleotide Length:1574 bp
Transcript Length:1098 bp
Protein Length:365 aa
Strand:+
Location:C01: 25460108 : 25461681
Gene CDSs(7): 1-117 | 204-533 | 604-853 | 935-1011 | 1093-1145 | 1231-1285 | 1359-1574 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Gene3DG3DSA:3.60.40.10no description 1 334 9.1e-87IPR001932Protein phosphatase 2C-related
PatternScanPS01032PP2C 52 60 NAIPR000222Protein phosphatase 2C, manganese/magnesium aspartate binding site
HMMSmartSM00331no description 28 330 0.0035IPR001932Protein phosphatase 2C-related
HMMSmartSM00332no description 13 328 1.7e-104IPR001932Protein phosphatase 2C-related
superfamilySSF81606Protein serine/threo 2 335 7e-86IPR001932Protein phosphatase 2C-related
Segsegseg 260 273 NANot foundNot found
Segsegseg 337 353 NANot foundNot found
HMMPfamPF00481PP2C 22 323 5.8e-78IPR014045Protein phosphatase 2C, N-terminal
HMMPantherPTHR13832:SF91PROTEIN PHOSPHATASE 1 359 4.1e-171Not foundNot found
HMMPantherPTHR13832PROTEIN PHOSPHATASE 1 359 4.1e-171IPR015655Protein phosphatase 2C
Gene Ontology
GO TermGO TypeDescription
GO:0003824 Molecular Function catalytic activity
GO:0004722 Molecular Function protein serine/threonine phosphatase activity
GO:0006470 Biological Process protein dephosphorylation
GO:0008287 Cellular Component protein serine/threonine phosphatase complex
Swiss-Prot
Best HitE_value Description
O817160.0P2C21_ARATH Probable protein phosphatase 2C 21 OS=Arabidopsis thaliana GN=PPC4-2 PE=2 SV=1
TrEMBL
Best HitE_value Description
B9RNU71e-163B9RNU7_RICCO Protein phosphatase 2c, putative OS=Ricinus communis GN=RCOM_0920800 PE=3 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT2G250700.0K01090E3.1.3.16protein phosphatase
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL13965(5 genes,3 taxa):Arabidopsis thalianaAT2G25070.1
ORTHOMCL13965(5 genes,3 taxa):Brassica oleraceaBol014775
ORTHOMCL13965(5 genes,3 taxa):Brassica oleraceaBol045761
ORTHOMCL13965(5 genes,3 taxa):Brassica rapaBra007820
ORTHOMCL13965(5 genes,3 taxa):Brassica rapaBra032043
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:25101926..25500933 (-)A.thalianaChr3:19033568..19235889 (+)19
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:24601455..25500933 (+)B.rapaA01:22742065..22864930 (-)14
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
IAT2G250701066324010665964Chr2Subgenome_I6
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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