Basic Information
Gene Model:Bol014767
Gene Family:Transcription Factor Families
Chromosome:C01
Scaffold:Scaffold000171
Sequence:
 | 
Gene Structure
Nucleotide Length:2590 bp
Transcript Length:1746 bp
Protein Length:581 aa
Strand:+
Location:C01: 25367442 : 25370031
Gene CDSs(6): 1-130 | 514-666 | 779-1138 | 1311-1387 | 1484-2434 | 2516-2590 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
superfamilySSF52172CheY-like 15 135 1.6e-35IPR011006CheY-like
superfamilySSF46689Homeodomain-like 187 250 2.1e-20IPR009057Homeodomain-like
HMMTigrTIGR01557myb_SHAQKYF: myb-lik 191 246 8.7e-29IPR006447Myb-like DNA-binding region, SHAQKYF class
HMMPantherPTHR23283SENSOR HISTIDINE KIN 17 138 1.4e-18Not foundNot found
HMMPantherPTHR23283:SF38TETRACYCLINE RESISTA 17 138 1.4e-18Not foundNot found
Gene3DG3DSA:1.10.10.60no description 187 250 1.6e-23IPR012287Homeodomain-related
Gene3DG3DSA:3.40.50.2300no description 18 138 1e-29Not foundNot found
HMMSmartSM00448no description 18 130 4.6e-33IPR001789Signal transduction response regulator, receiver region
Segsegseg 173 185 NANot foundNot found
ProfileScanPS51294HTH_MYB 188 247 11.056IPR017930Myb-type HTH DNA-binding domain
ProfileScanPS50110RESPONSE_REGULATORY 19 134 33.104IPR001789Signal transduction response regulator, receiver region
HMMPfamPF00249Myb_DNA-binding 193 243 9.9e-12IPR014778Myb, DNA-binding
HMMPfamPF00072Response_reg 20 131 7.1e-29IPR001789Signal transduction response regulator, receiver region
HMMPIRPIRSF036392Response regulator, 1 580 9.9e-235IPR017053Response regulator, plant B-type
Gene Ontology
GO TermGO TypeDescription
GO:0000156 Molecular Function two-component response regulator activity
GO:0000160 Biological Process two-component signal transduction system (phosphorelay)
GO:0003677 Molecular Function DNA binding
GO:0006355 Biological Process regulation of transcription, DNA-dependent
GO:0045449 Biological Process regulation of transcription
Swiss-Prot
Best HitE_value Description
P625980.0ARR12_ARATH Two-component response regulator ARR12 OS=Arabidopsis thaliana GN=ARR12 PE=2 SV=1
TrEMBL
Best HitE_value Description
Q0WRZ41e-161Q0WRZ4_ARATH Predicted protein OS=Arabidopsis thaliana GN=At4g31920 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT2G251800.0K14491ARR-Btwo-component response regulator ARR-B family
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL2977(13 genes,8 taxa):Arabidopsis thalianaAT2G25180.1
ORTHOMCL2977(13 genes,8 taxa):Brassica oleraceaBol014767
ORTHOMCL2977(13 genes,8 taxa):Brassica rapaBra032035
ORTHOMCL2977(13 genes,8 taxa):Vitis viniferaGSVIVT01003721001
ORTHOMCL2977(13 genes,8 taxa):Oryza sativaOs02t0796500-01
ORTHOMCL2977(13 genes,8 taxa):Oryza sativaOs02t0796500-02
ORTHOMCL2977(13 genes,8 taxa):Oryza sativaOs06t0183100-01
ORTHOMCL2977(13 genes,8 taxa):Oryza sativaOs06t0183100-02
ORTHOMCL2977(13 genes,8 taxa):Populus trichocarpaPOPTR_0006s20220.1
ORTHOMCL2977(13 genes,8 taxa):Populus trichocarpaPOPTR_0018s11960.1
ORTHOMCL2977(13 genes,8 taxa):Sorghum bicolorSb04g035980.1
ORTHOMCL2977(13 genes,8 taxa):Sorghum bicolorSb10g005580.1
ORTHOMCL2977(13 genes,8 taxa):Carica papayaevm.TU.supercontig_46.119
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:25101926..25500933 (-)A.thalianaChr3:19033568..19235889 (+)19
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:24601455..25500933 (+)B.rapaA01:22742065..22864930 (-)14
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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