Basic Information
Gene Model:Bol014763
Gene Family:Not classificated
Chromosome:C01
Scaffold:Scaffold000171
Sequence:
 | 
Gene Structure
Nucleotide Length:1220 bp
Transcript Length:1068 bp
Protein Length:355 aa
Strand:+
Location:C01: 25324092 : 25325311
Gene CDSs(3): 1-132 | 218-391 | 459-1220 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPantherPTHR13832PROTEIN PHOSPHATASE 42 343 2.1e-166IPR015655Protein phosphatase 2C
HMMPantherPTHR13832:SF92PROTEIN PHOSPHATASE 42 343 2.1e-166Not foundNot found
HMMPfamPF00481PP2C 63 314 2.6e-83IPR014045Protein phosphatase 2C, N-terminal
Segsegseg 242 264 NANot foundNot found
superfamilySSF81606Protein serine/threo 61 326 3.9e-75IPR001932Protein phosphatase 2C-related
Gene3DG3DSA:3.60.40.10no description 61 325 7.9e-74IPR001932Protein phosphatase 2C-related
HMMSmartSM00331no description 83 321 0.0046IPR001932Protein phosphatase 2C-related
HMMSmartSM00332no description 54 319 1.3e-86IPR001932Protein phosphatase 2C-related
PatternScanPS01032PP2C 100 108 NAIPR000222Protein phosphatase 2C, manganese/magnesium aspartate binding site
Gene Ontology
GO TermGO TypeDescription
GO:0003824 Molecular Function catalytic activity
GO:0004722 Molecular Function protein serine/threonine phosphatase activity
GO:0006470 Biological Process protein dephosphorylation
GO:0008287 Cellular Component protein serine/threonine phosphatase complex
Swiss-Prot
Best HitE_value Description
Q9SD020.0P2C47_ARATH Probable protein phosphatase 2C 47 OS=Arabidopsis thaliana GN=At3g51470 PE=1 SV=1
TrEMBL
Best HitE_value Description
B9S6W21e-149B9S6W2_RICCO Protein phosphatase 2c, putative OS=Ricinus communis GN=RCOM_0874960 PE=3 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
osa:43414332e-93K01090E3.1.3.16protein phosphatase
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL8005(9 genes,6 taxa):Arabidopsis thalianaAT3G51470.1
ORTHOMCL8005(9 genes,6 taxa):Brassica oleraceaBol010604
ORTHOMCL8005(9 genes,6 taxa):Brassica oleraceaBol014763
ORTHOMCL8005(9 genes,6 taxa):Brassica rapaBra036796
ORTHOMCL8005(9 genes,6 taxa):Brassica rapaBra038901
ORTHOMCL8005(9 genes,6 taxa):Vitis viniferaGSVIVT01022296001
ORTHOMCL8005(9 genes,6 taxa):Populus trichocarpaPOPTR_0005s10550.1
ORTHOMCL8005(9 genes,6 taxa):Populus trichocarpaPOPTR_0007s09470.1
ORTHOMCL8005(9 genes,6 taxa):Carica papayaevm.TU.supercontig_6.352
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:25101926..25500933 (-)A.thalianaChr3:19033568..19235889 (+)19
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:24601455..25500933 (+)B.rapaA01:22742065..22864930 (-)14
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
NAT3G514701909778719099275Chr3Subgenome_I17
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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