Basic Information
Gene Model:Bol014623
Gene Family:Not classificated
Chromosome:Cun
Scaffold:Scaffold000172_P1
Sequence:
 | 
Gene Structure
Nucleotide Length:1173 bp
Transcript Length:1173 bp
Protein Length:390 aa
Strand:+
Location:Scaffold000172_P1: 449866 : 451038
Gene CDSs(1): 1-1173 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF03151TPT 192 340 2.3e-38IPR004853Protein of unknown function DUF250
HMMPfamPF00892DUF6 70 174 9.5e-09IPR000620Protein of unknown function DUF6, transmembrane
superfamilySSF103481Multidrug resistance 72 181 5.8e-10Not foundNot found
Segsegseg 345 358 NANot foundNot found
Segsegseg 123 146 NANot foundNot found
Segsegseg 157 177 NANot foundNot found
Segsegseg 81 98 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0016020 Cellular Component membrane
Swiss-Prot
Best HitE_value Description
Q9SY291e-165PUP4_ARATH Probable purine permease 4 OS=Arabidopsis thaliana GN=PUP4 PE=2 SV=1
TrEMBL
Best HitE_value Description
B9T6X21e-124B9T6X2_RICCO Purine transporter, putative OS=Ricinus communis GN=RCOM_0274170 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL4452(11 genes,8 taxa):Arabidopsis thalianaAT1G30840.1
ORTHOMCL4452(11 genes,8 taxa):Brassica oleraceaBol011637
ORTHOMCL4452(11 genes,8 taxa):Brassica oleraceaBol014623
ORTHOMCL4452(11 genes,8 taxa):Brassica rapaBra023141
ORTHOMCL4452(11 genes,8 taxa):Brassica rapaBra023144
ORTHOMCL4452(11 genes,8 taxa):Vitis viniferaGSVIVT01037085001
ORTHOMCL4452(11 genes,8 taxa):Oryza sativaOs01t0680200-01
ORTHOMCL4452(11 genes,8 taxa):Populus trichocarpaPOPTR_0001s12370.1
ORTHOMCL4452(11 genes,8 taxa):Populus trichocarpaPOPTR_0003s15560.1
ORTHOMCL4452(11 genes,8 taxa):Sorghum bicolorSb03g031210.1
ORTHOMCL4452(11 genes,8 taxa):Carica papayaevm.TU.supercontig_30.55
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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