Basic Information
Gene Model:Bol014614
Gene Family:Not classificated
Chromosome:Cun
Scaffold:Scaffold000172_P1
Sequence:
 | 
Gene Structure
Nucleotide Length:11346 bp
Transcript Length:2148 bp
Protein Length:715 aa
Strand:-
Location:Scaffold000172_P1: 179921 : 191266
Gene CDSs(19): 1-81 | 383-488 | 617-735 | 970-1038 | 1131-1217 | 1893-2015 | 2141-2217 | 2297-2442 | 9048-9092 | 9167-9243 | 9347-9463 | 9555-9652 | 9737-9751 | 9918-10019 | 10104-10197 | 10286-10376 | 10470-10562 | 10643-10974 | 11071-11346 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Coilcoilcoiled-coil 273 294 NANot foundNot found
Coilcoilcoiled-coil 299 320 NANot foundNot found
HMMPantherPTHR11802:SF7SERINE CARBOXYPEPTID 448 715 2.1e-125Not foundNot found
HMMPantherPTHR11802SERINE PROTEASE FAMI 448 715 2.1e-125IPR001563Peptidase S10, serine carboxypeptidase
HMMPfamPF00450Peptidase_S10 448 562 1.8e-58IPR001563Peptidase S10, serine carboxypeptidase
HMMPfamPF05003DUF668 347 432 5.7e-50IPR007700Protein of unknown function DUF668
superfamilySSF53474alpha/beta-Hydrolase 425 715 1.1e-57Not foundNot found
Gene3DG3DSA:3.40.50.1820no description 440 715 6.5e-57Not foundNot found
Segsegseg 306 326 NANot foundNot found
Segsegseg 10 29 NANot foundNot found
Segsegseg 161 175 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0004185 Molecular Function serine-type carboxypeptidase activity
GO:0006508 Biological Process proteolysis
Swiss-Prot
Best HitE_value Description
Q8H7801e-80SCP13_ARATH Serine carboxypeptidase-like 13 OS=Arabidopsis thaliana GN=SCPL13 PE=2 SV=2
TrEMBL
Best HitE_value Description
Q8L5Y30.0Q8L5Y3_ARATH Putative uncharacterized protein At1g30750 OS=Arabidopsis thaliana GN=At1g30750 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT2G229905e-49K09757SCPL8, SNG1--
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL5696(10 genes,8 taxa):Arabidopsis thalianaAT1G30755.1
ORTHOMCL5696(10 genes,8 taxa):Brassica oleraceaBol014614
ORTHOMCL5696(10 genes,8 taxa):Brassica rapaBra023130
ORTHOMCL5696(10 genes,8 taxa):Vitis viniferaGSVIVT01009920001
ORTHOMCL5696(10 genes,8 taxa):Oryza sativaOs06t0716000-01
ORTHOMCL5696(10 genes,8 taxa):Populus trichocarpaPOPTR_0002s02300.1
ORTHOMCL5696(10 genes,8 taxa):Populus trichocarpaPOPTR_0005s26180.1
ORTHOMCL5696(10 genes,8 taxa):Populus trichocarpaPOPTR_0005s26180.2
ORTHOMCL5696(10 genes,8 taxa):Sorghum bicolorSb10g030190.1
ORTHOMCL5696(10 genes,8 taxa):Carica papayaevm.TU.supercontig_26.56
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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