Basic Information
Gene Model:Bol014603
Gene Family:Not classificated
Chromosome:Cun
Scaffold:Scaffold000172_P1
Sequence:
 | 
Gene Structure
Nucleotide Length:3356 bp
Transcript Length:2511 bp
Protein Length:836 aa
Strand:-
Location:Scaffold000172_P1: 57008 : 60363
Gene CDSs(9): 1-704 | 785-1055 | 1132-1457 | 1533-1815 | 1904-1976 | 2100-2195 | 2268-2665 | 2739-2871 | 3130-3356 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Gene3DG3DSA:3.40.50.200no description 164 689 3.2e-64IPR000209Peptidase S8/S53, subtilisin/kexin/sedolisin
PatternScanPS00138SUBTILASE_SER 611 621 NAIPR000209Peptidase S8/S53, subtilisin/kexin/sedolisin
PatternScanPS00136SUBTILASE_ASP 172 183 NAIPR000209Peptidase S8/S53, subtilisin/kexin/sedolisin
PatternScanPS00070ALDEHYDE_DEHYDR_CYS 716 727 NAIPR016160Aldehyde dehydrogenase, conserved site
Segsegseg 634 649 NANot foundNot found
Segsegseg 300 313 NANot foundNot found
Segsegseg 58 72 NANot foundNot found
Segsegseg 31 38 NANot foundNot found
Segsegseg 4 24 NANot foundNot found
HMMPantherPTHR10795SUBTILISIN/KEXIN-REL 69 835 3e-246IPR015500Peptidase S8, subtilisin-related
HMMPantherPTHR10795:SF17SUBTILISIN-LIKE PROT 69 835 3e-246Not foundNot found
HMMPfamPF06280DUF1034 714 829 1.5e-10IPR010435Peptidase S8A, DUF1034 C-terminal
HMMPfamPF02225PA 403 518 6.1e-16IPR003137Protease-associated PA
HMMPfamPF00082Peptidase_S8 145 662 1.2e-27IPR000209Peptidase S8/S53, subtilisin/kexin/sedolisin
HMMPfamPF05922Inhibitor_I9 38 142 3e-13IPR010259Proteinase inhibitor I9, subtilisin propeptide
superfamilySSF52743Subtilisin-like 140 693 4.5e-70IPR000209Peptidase S8/S53, subtilisin/kexin/sedolisin
Gene Ontology
GO TermGO TypeDescription
GO:0004252 Molecular Function serine-type endopeptidase activity
GO:0005618 Cellular Component cell wall
GO:0006508 Biological Process proteolysis
GO:0008152 Biological Process metabolic process
GO:0016020 Cellular Component membrane
GO:0016491 Molecular Function oxidoreductase activity
GO:0042802 Molecular Function identical protein binding
GO:0043086 Biological Process negative regulation of catalytic activity
GO:0055114 Biological Process oxidation-reduction process
Swiss-Prot
Best HitE_value Description
O653518e-89SUBL_ARATH Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1
TrEMBL
Best HitE_value Description
Q9SA750.0Q9SA75_ARATH T5I8.5 protein OS=Arabidopsis thaliana GN=At1g30600 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL322(33 genes,8 taxa):Arabidopsis thalianaAT1G30600.1
ORTHOMCL322(33 genes,8 taxa):Arabidopsis thalianaAT2G19170.1
ORTHOMCL322(33 genes,8 taxa):Arabidopsis thalianaAT4G20430.1
ORTHOMCL322(33 genes,8 taxa):Arabidopsis thalianaAT4G30020.1
ORTHOMCL322(33 genes,8 taxa):Arabidopsis thalianaAT5G44530.1
ORTHOMCL322(33 genes,8 taxa):Brassica oleraceaBol006370
ORTHOMCL322(33 genes,8 taxa):Brassica oleraceaBol014603
ORTHOMCL322(33 genes,8 taxa):Brassica oleraceaBol020964
ORTHOMCL322(33 genes,8 taxa):Brassica oleraceaBol022689
ORTHOMCL322(33 genes,8 taxa):Brassica oleraceaBol028350
ORTHOMCL322(33 genes,8 taxa):Brassica oleraceaBol029805
ORTHOMCL322(33 genes,8 taxa):Brassica oleraceaBol033631
ORTHOMCL322(33 genes,8 taxa):Brassica rapaBra011160
ORTHOMCL322(33 genes,8 taxa):Brassica rapaBra013464
ORTHOMCL322(33 genes,8 taxa):Brassica rapaBra024112
ORTHOMCL322(33 genes,8 taxa):Brassica rapaBra032407
ORTHOMCL322(33 genes,8 taxa):Brassica rapaBra033749
ORTHOMCL322(33 genes,8 taxa):Brassica rapaBra036728
ORTHOMCL322(33 genes,8 taxa):Brassica rapaBra038844
ORTHOMCL322(33 genes,8 taxa):Vitis viniferaGSVIVT01004808001
ORTHOMCL322(33 genes,8 taxa):Vitis viniferaGSVIVT01010871001
ORTHOMCL322(33 genes,8 taxa):Vitis viniferaGSVIVT01037948001
ORTHOMCL322(33 genes,8 taxa):Oryza sativaOs01t0769200-01
ORTHOMCL322(33 genes,8 taxa):Oryza sativaOs06t0700000-01
ORTHOMCL322(33 genes,8 taxa):Populus trichocarpaPOPTR_0001s15120.1
ORTHOMCL322(33 genes,8 taxa):Populus trichocarpaPOPTR_0001s43080.1
ORTHOMCL322(33 genes,8 taxa):Populus trichocarpaPOPTR_0006s07580.1
ORTHOMCL322(33 genes,8 taxa):Populus trichocarpaPOPTR_0011s15890.1
ORTHOMCL322(33 genes,8 taxa):Populus trichocarpaPOPTR_0018s14020.1
ORTHOMCL322(33 genes,8 taxa):Populus trichocarpaPOPTR_0018s14020.2
ORTHOMCL322(33 genes,8 taxa):Sorghum bicolorSb03g035770.1
ORTHOMCL322(33 genes,8 taxa):Sorghum bicolorSb10g028870.1
ORTHOMCL322(33 genes,8 taxa):Carica papayaevm.TU.supercontig_95.18
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


logo