Basic Information
Gene Model:Bol014595
Gene Family:Amino Acid/Auxin Permease AAAP Family
Chromosome:Cun
Scaffold:Scaffold000173
Sequence:
 | 
Gene Structure
Nucleotide Length:2299 bp
Transcript Length:1359 bp
Protein Length:452 aa
Strand:+
Location:Scaffold000173: 1127523 : 1129821
Gene CDSs(7): 1-85 | 161-391 | 873-970 | 1067-1253 | 1354-1484 | 1567-1803 | 1910-2299 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 117 135 NANot foundNot found
Segsegseg 222 235 NANot foundNot found
HMMPfamPF01490Aa_trans 27 438 4.3e-64IPR013057Amino acid transporter, transmembrane
HMMPantherPTHR22950AMINO ACID TRANSPORT 15 447 7.5e-77Not foundNot found
Gene Ontology
GO TermGO TypeDescription

Note: this gene was not detected its best hit in Swiss-Prot database.

Swiss-Prot
Best HitE_value Description
Q9FKS82e-43LHT1_ARATH Lysine histidine transporter 1 OS=Arabidopsis thaliana GN=LHT1 PE=1 SV=1
TrEMBL
Best HitE_value Description
Q8L4X40.0Q8L4X4_ARATH Amino acid permease-like protein OS=Arabidopsis thaliana GN=At5g41800 PE=1 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
rcu:RCOM_11511103e-10K13946AUX1, LAXauxin influx carrier (AUX1 LAX family)
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL4188(12 genes,7 taxa):Arabidopsis thalianaAT5G41800.1
ORTHOMCL4188(12 genes,7 taxa):Brassica oleraceaBol014595
ORTHOMCL4188(12 genes,7 taxa):Brassica oleraceaBol036362
ORTHOMCL4188(12 genes,7 taxa):Brassica rapaBra025460
ORTHOMCL4188(12 genes,7 taxa):Brassica rapaBra028507
ORTHOMCL4188(12 genes,7 taxa):Vitis viniferaGSVIVT01019506001
ORTHOMCL4188(12 genes,7 taxa):Oryza sativaOs01t0621200-00
ORTHOMCL4188(12 genes,7 taxa):Oryza sativaOs05t0586500-01
ORTHOMCL4188(12 genes,7 taxa):Populus trichocarpaPOPTR_0001s10430.1
ORTHOMCL4188(12 genes,7 taxa):Populus trichocarpaPOPTR_0003s13790.1
ORTHOMCL4188(12 genes,7 taxa):Sorghum bicolorSb03g028210.1
ORTHOMCL4188(12 genes,7 taxa):Sorghum bicolorSb09g030080.1
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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