Basic Information
Gene Model:Bol014404
Gene Family:Not classificated
Chromosome:C04
Scaffold:Scaffold000174
Sequence:
 | 
Gene Structure
Nucleotide Length:1724 bp
Transcript Length:1131 bp
Protein Length:376 aa
Strand:-
Location:C04: 14573037 : 14574760
Gene CDSs(4): 1-553 | 765-1000 | 1085-1267 | 1566-1724 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
PatternScanPS01032PP2C 112 120 NAIPR000222Protein phosphatase 2C, manganese/magnesium aspartate binding site
HMMSmartSM00332no description 63 343 6.4e-86IPR001932Protein phosphatase 2C-related
HMMSmartSM00331no description 88 345 0.00041IPR001932Protein phosphatase 2C-related
superfamilySSF81606Protein serine/threo 52 345 7.2e-76IPR001932Protein phosphatase 2C-related
Segsegseg 169 190 NANot foundNot found
Gene3DG3DSA:3.60.40.10no description 70 345 6.1e-73IPR001932Protein phosphatase 2C-related
HMMPantherPTHR13832PROTEIN PHOSPHATASE 70 347 5.3e-158IPR015655Protein phosphatase 2C
HMMPantherPTHR13832:SF92PROTEIN PHOSPHATASE 70 347 5.3e-158Not foundNot found
HMMPfamPF00481PP2C 72 338 1.4e-77IPR014045Protein phosphatase 2C, N-terminal
Gene Ontology
GO TermGO TypeDescription
GO:0003824 Molecular Function catalytic activity
GO:0004722 Molecular Function protein serine/threonine phosphatase activity
GO:0006470 Biological Process protein dephosphorylation
GO:0008287 Cellular Component protein serine/threonine phosphatase complex
Swiss-Prot
Best HitE_value Description
Q3EAF91e-165P2C49_ARATH Probable protein phosphatase 2C 49 OS=Arabidopsis thaliana GN=At3g62260 PE=2 SV=1
TrEMBL
Best HitE_value Description
C6TAP01e-125C6TAP0_SOYBN Putative uncharacterized protein OS=Glycine max PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
osa:43377231e-107K01090E3.1.3.16protein phosphatase
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL3962(12 genes,7 taxa):Arabidopsis thalianaAT3G62260.2
ORTHOMCL3962(12 genes,7 taxa):Brassica oleraceaBol002516
ORTHOMCL3962(12 genes,7 taxa):Brassica oleraceaBol014404
ORTHOMCL3962(12 genes,7 taxa):Brassica oleraceaBol044591
ORTHOMCL3962(12 genes,7 taxa):Brassica rapaBra007669
ORTHOMCL3962(12 genes,7 taxa):Vitis viniferaGSVIVT01028192001
ORTHOMCL3962(12 genes,7 taxa):Oryza sativaOs01t0295700-01
ORTHOMCL3962(12 genes,7 taxa):Oryza sativaOs05t0134200-01
ORTHOMCL3962(12 genes,7 taxa):Populus trichocarpaPOPTR_0002s19100.1
ORTHOMCL3962(12 genes,7 taxa):Populus trichocarpaPOPTR_0014s11090.1
ORTHOMCL3962(12 genes,7 taxa):Sorghum bicolorSb03g012020.1
ORTHOMCL3962(12 genes,7 taxa):Sorghum bicolorSb09g002720.1
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:14365044..14655426 (+)A.thalianaChr3:22935510..23080563 (+)16
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:14365044..15221982 (+)B.rapaA09:14393486..14836280 (+)40
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
NAT3G622602303829023040570Chr3Subgenome_I26
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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