Basic Information
Gene Model:Bol014391
Gene Family:Not classificated
Chromosome:C04
Scaffold:Scaffold000174
Sequence:
 | 
Gene Structure
Nucleotide Length:495 bp
Transcript Length:495 bp
Protein Length:164 aa
Strand:+
Location:C04: 14470782 : 14471276
Gene CDSs(1): 1-495 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 83 113 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription

Note: this gene was not detected its best hit in Swiss-Prot database.

Swiss-Prot
Best HitE_value Description
Q9M2682e-55NGA2_ARATH B3 domain-containing transcription factor NGA2 OS=Arabidopsis thaliana GN=NGA2 PE=2 SV=1
TrEMBL
Best HitE_value Description
C3VMM32e-54C3VMM3_ARATH NGATHA2 OS=Arabidopsis thaliana GN=NGA2 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL18711(3 genes,3 taxa):Arabidopsis thalianaAT3G61970.1
ORTHOMCL18711(3 genes,3 taxa):Brassica oleraceaBol014391
ORTHOMCL18711(3 genes,3 taxa):Brassica rapaBra014415
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:14365044..14655426 (+)A.thalianaChr3:22935510..23080563 (+)16
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:14365044..15221982 (+)B.rapaA09:14393486..14836280 (+)40
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
NAT3G619702295146322952851Chr3Subgenome_I26
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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