Basic Information
Gene Model:Bol014291
Gene Family:Not classificated
Chromosome:Cun
Scaffold:Scaffold000175_P1
Sequence:
 | 
Gene Structure
Nucleotide Length:1562 bp
Transcript Length:1155 bp
Protein Length:384 aa
Strand:-
Location:Scaffold000175_P1: 205590 : 207151
Gene CDSs(4): 1-273 | 347-583 | 686-1071 | 1304-1562 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 181 192 NANot foundNot found
Segsegseg 297 315 NANot foundNot found
superfamilySSF81606Protein serine/threo 36 346 1.8e-54IPR001932Protein phosphatase 2C-related
HMMPantherPTHR13832:SF97PROTEIN PHOSPHATASE- 24 381 4.1e-172Not foundNot found
HMMPantherPTHR13832PROTEIN PHOSPHATASE 24 381 4.1e-172IPR015655Protein phosphatase 2C
HMMPfamPF00481PP2C 61 313 5e-32IPR014045Protein phosphatase 2C, N-terminal
HMMSmartSM00332no description 25 339 3.3e-74IPR001932Protein phosphatase 2C-related
PatternScanPS01032PP2C 61 69 NAIPR000222Protein phosphatase 2C, manganese/magnesium aspartate binding site
Gene3DG3DSA:3.60.40.10no description 44 345 7.7e-55IPR001932Protein phosphatase 2C-related
Gene Ontology
GO TermGO TypeDescription
GO:0003824 Molecular Function catalytic activity
GO:0004722 Molecular Function protein serine/threonine phosphatase activity
GO:0006470 Biological Process protein dephosphorylation
GO:0008287 Cellular Component protein serine/threonine phosphatase complex
Swiss-Prot
Best HitE_value Description
O817600.0P2C63_ARATH Probable protein phosphatase 2C 63 OS=Arabidopsis thaliana GN=At4g33920 PE=1 SV=1
TrEMBL
Best HitE_value Description
B9GHV41e-159B9GHV4_POPTR Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_1069683 PE=3 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
cbr:CBG121917e-24K01102E3.1.3.43, PDPpyruvate dehydrogenase phosphatase
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL3254(13 genes,8 taxa):Arabidopsis thalianaAT4G33920.1
ORTHOMCL3254(13 genes,8 taxa):Brassica oleraceaBol014291
ORTHOMCL3254(13 genes,8 taxa):Brassica oleraceaBol033844
ORTHOMCL3254(13 genes,8 taxa):Brassica rapaBra034592
ORTHOMCL3254(13 genes,8 taxa):Brassica rapaBra036972
ORTHOMCL3254(13 genes,8 taxa):Vitis viniferaGSVIVT01000159001
ORTHOMCL3254(13 genes,8 taxa):Vitis viniferaGSVIVT01037875001
ORTHOMCL3254(13 genes,8 taxa):Oryza sativaOs03t0761100-01
ORTHOMCL3254(13 genes,8 taxa):Oryza sativaOs12t0580900-01
ORTHOMCL3254(13 genes,8 taxa):Populus trichocarpaPOPTR_0001s30440.1
ORTHOMCL3254(13 genes,8 taxa):Populus trichocarpaPOPTR_0009s09470.1
ORTHOMCL3254(13 genes,8 taxa):Sorghum bicolorSb01g007340.1
ORTHOMCL3254(13 genes,8 taxa):Carica papayaevm.TU.supercontig_200.4
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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