Basic Information
Gene Model:Bol014227
Gene Family:Not classificated
Chromosome:C02
Scaffold:Scaffold000176
Sequence:
 | 
Gene Structure
Nucleotide Length:2186 bp
Transcript Length:1680 bp
Protein Length:559 aa
Strand:+
Location:C02: 9383673 : 9385858
Gene CDSs(5): 1-15 | 98-164 | 445-1009 | 1088-1395 | 1462-2186 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 113 124 NANot foundNot found
HMMPantherPTHR21736VERNALIZATION-INSENS 40 354 5.8e-135Not foundNot found
HMMPantherPTHR21736:SF13VERNALIZATION-INSENS 40 354 5.8e-135Not foundNot found
PatternScanPS00151ACYLPHOSPHATASE_2 274 290 NAIPR017968Acylphosphatase, conserved site
Gene Ontology
GO TermGO TypeDescription

Note: this gene was not detected its best hit in Swiss-Prot database.

Swiss-Prot
Best HitE_value Description
Q9FIE31e-176VIN3_ARATH Protein VERNALIZATION INSENSITIVE 3 OS=Arabidopsis thaliana GN=VIN3 PE=2 SV=2
TrEMBL
Best HitE_value Description
C4PFF91e-119C4PFF9_BRARC Vernalization insensitive 3 (Fragment) OS=Brassica rapa var. purpuraria GN=VIN3 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL14438(5 genes,3 taxa):Arabidopsis thalianaAT5G57380.1
ORTHOMCL14438(5 genes,3 taxa):Brassica oleraceaBol014227
ORTHOMCL14438(5 genes,3 taxa):Brassica oleraceaBol026036
ORTHOMCL14438(5 genes,3 taxa):Brassica rapaBra006824
ORTHOMCL14438(5 genes,3 taxa):Brassica rapaBra020445
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:8277827..10089401 (-)A.thalianaChr5:22972989..23830437 (+)105
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:4322905..10141266 (+)B.rapaA10:6145708..10195845 (+)263
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
WAT5G573802324639523249504Chr5Subgenome_I221
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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