Basic Information
Gene Model:Bol014206
Gene Family:Transcription Factor Families
Chromosome:C02
Scaffold:Scaffold000176
Sequence:
 | 
Gene Structure
Nucleotide Length:1449 bp
Transcript Length:852 bp
Protein Length:283 aa
Strand:+
Location:C02: 8967381 : 8968829
Gene CDSs(4): 1-72 | 506-956 | 1019-1107 | 1210-1449 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
ProfileScanPS50863B3 9 103 13.197IPR003340Transcriptional factor B3
Segsegseg 192 205 NANot foundNot found
Segsegseg 116 130 NANot foundNot found
HMMPfamPF02362B3 8 105 1e-12IPR003340Transcriptional factor B3
Gene3DG3DSA:2.40.330.10no description 21 105 4.5e-14Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
Q9FHH14e-77Y5772_ARATH B3 domain-containing protein At5g57720 OS=Arabidopsis thaliana GN=At5g57720 PE=2 SV=1
TrEMBL
Best HitE_value Description
A9TWB45e-06A9TWB4_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_98143 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL19526(3 genes,3 taxa):Arabidopsis thalianaAT5G57720.1
ORTHOMCL19526(3 genes,3 taxa):Brassica oleraceaBol014206
ORTHOMCL19526(3 genes,3 taxa):Brassica rapaBra020417
Tandem Duplication
ClusterGene Num.Gene List
Cluster_5112Bol014205 Bol014206 
Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:8277827..10089401 (-)A.thalianaChr5:22972989..23830437 (+)105
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:4322905..10141266 (+)B.rapaA10:6145708..10195845 (+)263
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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