Basic Information
Gene Model:Bol014114
Gene Family:Protein Kinase Gene Families
Chromosome:C04
Scaffold:Scaffold000178
Sequence:
 | 
Gene Structure
Nucleotide Length:2482 bp
Transcript Length:1755 bp
Protein Length:584 aa
Strand:-
Location:C04: 34217213 : 34219694
Gene CDSs(7): 1-372 | 680-878 | 952-1110 | 1196-1314 | 1387-1597 | 1688-1919 | 2020-2482 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF00069Pkinase 267 465 7e-43IPR017442Serine/threonine-protein kinase-like domain
superfamilySSF56112Protein kinase-like 237 535 7.6e-80IPR011009Protein kinase-like domain
ProfileScanPS50011PROTEIN_KINASE_DOM 267 541 35.976IPR000719Protein kinase, catalytic domain
PatternScanPS00108PROTEIN_KINASE_ST 387 399 NAIPR008271Serine/threonine-protein kinase, active site
Segsegseg 560 571 NANot foundNot found
Segsegseg 221 240 NANot foundNot found
Segsegseg 205 219 NANot foundNot found
Gene3DG3DSA:1.10.510.10no description 345 546 1.2e-48Not foundNot found
Gene3DG3DSA:3.30.200.20no description 248 342 6.7e-24Not foundNot found
HMMPantherPTHR23258SERINE-THREONINE PRO 201 544 6.4e-273Not foundNot found
HMMPantherPTHR23258:SF469RECEPTOR-LIKE PROTEI 201 544 6.4e-273Not foundNot found
HMMSmartSM00219no description 267 535 5.2e-27IPR020635Tyrosine-protein kinase, subgroup, catalytic domain
HMMSmartSM00220no description 267 535 4.1e-27IPR002290Serine/threonine-protein kinase domain
Gene Ontology
GO TermGO TypeDescription
GO:0004672 Molecular Function protein kinase activity
GO:0004674 Molecular Function protein serine/threonine kinase activity
GO:0005524 Molecular Function ATP binding
GO:0006468 Biological Process protein phosphorylation
Swiss-Prot
Best HitE_value Description
C0LGH20.0Y1561_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g56130 OS=Arabidopsis thaliana GN=At1g56130 PE=1 SV=2
TrEMBL
Best HitE_value Description
Q3ECN40.0Q3ECN4_ARATH Leucine-rich repeat receptor-like protein kinase OS=Arabidopsis thaliana GN=LRR-RLK PE=1 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT4G334303e-64K13416BAK1--
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL10(178 genes,8 taxa):Arabidopsis thalianaAT1G07650.1
ORTHOMCL10(178 genes,8 taxa):Arabidopsis thalianaAT1G29720.2
ORTHOMCL10(178 genes,8 taxa):Arabidopsis thalianaAT1G29730.1
ORTHOMCL10(178 genes,8 taxa):Arabidopsis thalianaAT1G29740.1
ORTHOMCL10(178 genes,8 taxa):Arabidopsis thalianaAT1G29750.2
ORTHOMCL10(178 genes,8 taxa):Arabidopsis thalianaAT1G53420.1
ORTHOMCL10(178 genes,8 taxa):Arabidopsis thalianaAT1G53430.1
ORTHOMCL10(178 genes,8 taxa):Arabidopsis thalianaAT1G53440.1
ORTHOMCL10(178 genes,8 taxa):Arabidopsis thalianaAT1G56120.1
ORTHOMCL10(178 genes,8 taxa):Arabidopsis thalianaAT1G56130.1
ORTHOMCL10(178 genes,8 taxa):Arabidopsis thalianaAT1G56140.1
ORTHOMCL10(178 genes,8 taxa):Arabidopsis thalianaAT1G56145.1
ORTHOMCL10(178 genes,8 taxa):Brassica oleraceaBol001557
ORTHOMCL10(178 genes,8 taxa):Brassica oleraceaBol002793
ORTHOMCL10(178 genes,8 taxa):Brassica oleraceaBol005993
ORTHOMCL10(178 genes,8 taxa):Brassica oleraceaBol007082
ORTHOMCL10(178 genes,8 taxa):Brassica oleraceaBol008554
ORTHOMCL10(178 genes,8 taxa):Brassica oleraceaBol008560
ORTHOMCL10(178 genes,8 taxa):Brassica oleraceaBol011853
ORTHOMCL10(178 genes,8 taxa):Brassica oleraceaBol014114
ORTHOMCL10(178 genes,8 taxa):Brassica oleraceaBol022488
ORTHOMCL10(178 genes,8 taxa):Brassica oleraceaBol025724
ORTHOMCL10(178 genes,8 taxa):Brassica oleraceaBol031975
ORTHOMCL10(178 genes,8 taxa):Brassica oleraceaBol038983
ORTHOMCL10(178 genes,8 taxa):Brassica oleraceaBol041146
ORTHOMCL10(178 genes,8 taxa):Brassica rapaBra001566
ORTHOMCL10(178 genes,8 taxa):Brassica rapaBra001567
ORTHOMCL10(178 genes,8 taxa):Brassica rapaBra003333
ORTHOMCL10(178 genes,8 taxa):Brassica rapaBra007907
ORTHOMCL10(178 genes,8 taxa):Brassica rapaBra007908
ORTHOMCL10(178 genes,8 taxa):Brassica rapaBra007909
ORTHOMCL10(178 genes,8 taxa):Brassica rapaBra010815
ORTHOMCL10(178 genes,8 taxa):Brassica rapaBra010816
ORTHOMCL10(178 genes,8 taxa):Brassica rapaBra010817
ORTHOMCL10(178 genes,8 taxa):Brassica rapaBra016226
ORTHOMCL10(178 genes,8 taxa):Brassica rapaBra018693
ORTHOMCL10(178 genes,8 taxa):Brassica rapaBra021579
ORTHOMCL10(178 genes,8 taxa):Brassica rapaBra027302
ORTHOMCL10(178 genes,8 taxa):Brassica rapaBra027306
ORTHOMCL10(178 genes,8 taxa):Brassica rapaBra027307
ORTHOMCL10(178 genes,8 taxa):Brassica rapaBra028415
ORTHOMCL10(178 genes,8 taxa):Brassica rapaBra030161
ORTHOMCL10(178 genes,8 taxa):Brassica rapaBra030166
ORTHOMCL10(178 genes,8 taxa):Brassica rapaBra030167
ORTHOMCL10(178 genes,8 taxa):Brassica rapaBra030168
ORTHOMCL10(178 genes,8 taxa):Brassica rapaBra030169
ORTHOMCL10(178 genes,8 taxa):Brassica rapaBra030170
ORTHOMCL10(178 genes,8 taxa):Brassica rapaBra030174
ORTHOMCL10(178 genes,8 taxa):Brassica rapaBra030813
ORTHOMCL10(178 genes,8 taxa):Brassica rapaBra030815
ORTHOMCL10(178 genes,8 taxa):Brassica rapaBra032331
ORTHOMCL10(178 genes,8 taxa):Brassica rapaBra032332
ORTHOMCL10(178 genes,8 taxa):Brassica rapaBra032333
ORTHOMCL10(178 genes,8 taxa):Brassica rapaBra033670
ORTHOMCL10(178 genes,8 taxa):Brassica rapaBra033958
ORTHOMCL10(178 genes,8 taxa):Brassica rapaBra034418
ORTHOMCL10(178 genes,8 taxa):Brassica rapaBra035966
ORTHOMCL10(178 genes,8 taxa):Brassica rapaBra038124
ORTHOMCL10(178 genes,8 taxa):Vitis viniferaGSVIVT01013608001
ORTHOMCL10(178 genes,8 taxa):Vitis viniferaGSVIVT01013612001
ORTHOMCL10(178 genes,8 taxa):Vitis viniferaGSVIVT01013621001
ORTHOMCL10(178 genes,8 taxa):Vitis viniferaGSVIVT01014110001
ORTHOMCL10(178 genes,8 taxa):Vitis viniferaGSVIVT01014113001
ORTHOMCL10(178 genes,8 taxa):Vitis viniferaGSVIVT01014117001
ORTHOMCL10(178 genes,8 taxa):Vitis viniferaGSVIVT01014120001
ORTHOMCL10(178 genes,8 taxa):Vitis viniferaGSVIVT01014128001
ORTHOMCL10(178 genes,8 taxa):Vitis viniferaGSVIVT01014134001
ORTHOMCL10(178 genes,8 taxa):Vitis viniferaGSVIVT01014138001
ORTHOMCL10(178 genes,8 taxa):Vitis viniferaGSVIVT01014140001
ORTHOMCL10(178 genes,8 taxa):Vitis viniferaGSVIVT01014145001
ORTHOMCL10(178 genes,8 taxa):Vitis viniferaGSVIVT01014147001
ORTHOMCL10(178 genes,8 taxa):Vitis viniferaGSVIVT01014149001
ORTHOMCL10(178 genes,8 taxa):Vitis viniferaGSVIVT01014150001
ORTHOMCL10(178 genes,8 taxa):Vitis viniferaGSVIVT01020786001
ORTHOMCL10(178 genes,8 taxa):Vitis viniferaGSVIVT01021278001
ORTHOMCL10(178 genes,8 taxa):Vitis viniferaGSVIVT01021280001
ORTHOMCL10(178 genes,8 taxa):Vitis viniferaGSVIVT01021282001
ORTHOMCL10(178 genes,8 taxa):Vitis viniferaGSVIVT01021283001
ORTHOMCL10(178 genes,8 taxa):Vitis viniferaGSVIVT01021285001
ORTHOMCL10(178 genes,8 taxa):Vitis viniferaGSVIVT01021286001
ORTHOMCL10(178 genes,8 taxa):Vitis viniferaGSVIVT01021289001
ORTHOMCL10(178 genes,8 taxa):Vitis viniferaGSVIVT01021291001
ORTHOMCL10(178 genes,8 taxa):Vitis viniferaGSVIVT01021293001
ORTHOMCL10(178 genes,8 taxa):Vitis viniferaGSVIVT01021295001
ORTHOMCL10(178 genes,8 taxa):Vitis viniferaGSVIVT01021297001
ORTHOMCL10(178 genes,8 taxa):Vitis viniferaGSVIVT01029718001
ORTHOMCL10(178 genes,8 taxa):Vitis viniferaGSVIVT01029720001
ORTHOMCL10(178 genes,8 taxa):Vitis viniferaGSVIVT01037982001
ORTHOMCL10(178 genes,8 taxa):Vitis viniferaGSVIVT01037993001
ORTHOMCL10(178 genes,8 taxa):Vitis viniferaGSVIVT01038011001
ORTHOMCL10(178 genes,8 taxa):Oryza sativaOs02t0232500-01
ORTHOMCL10(178 genes,8 taxa):Oryza sativaOs02t0232500-02
ORTHOMCL10(178 genes,8 taxa):Oryza sativaOs04t0291900-00
ORTHOMCL10(178 genes,8 taxa):Oryza sativaOs04t0616300-01
ORTHOMCL10(178 genes,8 taxa):Oryza sativaOs04t0616400-01
ORTHOMCL10(178 genes,8 taxa):Oryza sativaOs04t0616400-02
ORTHOMCL10(178 genes,8 taxa):Oryza sativaOs04t0616500-01
ORTHOMCL10(178 genes,8 taxa):Oryza sativaOs04t0616700-03
ORTHOMCL10(178 genes,8 taxa):Oryza sativaOs05t0256500-00
ORTHOMCL10(178 genes,8 taxa):Oryza sativaOs05t0257100-01
ORTHOMCL10(178 genes,8 taxa):Oryza sativaOs05t0258900-00
ORTHOMCL10(178 genes,8 taxa):Oryza sativaOs05t0261700-02
ORTHOMCL10(178 genes,8 taxa):Oryza sativaOs05t0263100-00
ORTHOMCL10(178 genes,8 taxa):Oryza sativaOs08t0201700-00
ORTHOMCL10(178 genes,8 taxa):Oryza sativaOs08t0203300-01
ORTHOMCL10(178 genes,8 taxa):Oryza sativaOs08t0203400-01
ORTHOMCL10(178 genes,8 taxa):Oryza sativaOs08t0203600-05
ORTHOMCL10(178 genes,8 taxa):Oryza sativaOs08t0203700-01
ORTHOMCL10(178 genes,8 taxa):Oryza sativaOs09t0345300-01
ORTHOMCL10(178 genes,8 taxa):Populus trichocarpaPOPTR_0001s11460.1
ORTHOMCL10(178 genes,8 taxa):Populus trichocarpaPOPTR_0001s31610.1
ORTHOMCL10(178 genes,8 taxa):Populus trichocarpaPOPTR_0001s39320.1
ORTHOMCL10(178 genes,8 taxa):Populus trichocarpaPOPTR_0001s39360.1
ORTHOMCL10(178 genes,8 taxa):Populus trichocarpaPOPTR_0001s39380.1
ORTHOMCL10(178 genes,8 taxa):Populus trichocarpaPOPTR_0001s39390.1
ORTHOMCL10(178 genes,8 taxa):Populus trichocarpaPOPTR_0001s39420.1
ORTHOMCL10(178 genes,8 taxa):Populus trichocarpaPOPTR_0001s39420.2
ORTHOMCL10(178 genes,8 taxa):Populus trichocarpaPOPTR_0001s39450.1
ORTHOMCL10(178 genes,8 taxa):Populus trichocarpaPOPTR_0001s39490.1
ORTHOMCL10(178 genes,8 taxa):Populus trichocarpaPOPTR_0003s14780.1
ORTHOMCL10(178 genes,8 taxa):Populus trichocarpaPOPTR_0004s06180.1
ORTHOMCL10(178 genes,8 taxa):Populus trichocarpaPOPTR_0004s06230.1
ORTHOMCL10(178 genes,8 taxa):Populus trichocarpaPOPTR_0004s06240.1
ORTHOMCL10(178 genes,8 taxa):Populus trichocarpaPOPTR_0004s06270.1
ORTHOMCL10(178 genes,8 taxa):Populus trichocarpaPOPTR_0004s06270.2
ORTHOMCL10(178 genes,8 taxa):Populus trichocarpaPOPTR_0004s14310.1
ORTHOMCL10(178 genes,8 taxa):Populus trichocarpaPOPTR_0007s08160.1
ORTHOMCL10(178 genes,8 taxa):Populus trichocarpaPOPTR_0011s03200.1
ORTHOMCL10(178 genes,8 taxa):Populus trichocarpaPOPTR_0011s03210.1
ORTHOMCL10(178 genes,8 taxa):Populus trichocarpaPOPTR_0011s06100.1
ORTHOMCL10(178 genes,8 taxa):Populus trichocarpaPOPTR_0011s06110.1
ORTHOMCL10(178 genes,8 taxa):Populus trichocarpaPOPTR_0011s06130.1
ORTHOMCL10(178 genes,8 taxa):Populus trichocarpaPOPTR_0011s06150.1
ORTHOMCL10(178 genes,8 taxa):Populus trichocarpaPOPTR_0011s06170.1
ORTHOMCL10(178 genes,8 taxa):Populus trichocarpaPOPTR_0011s06220.1
ORTHOMCL10(178 genes,8 taxa):Populus trichocarpaPOPTR_0011s06240.1
ORTHOMCL10(178 genes,8 taxa):Populus trichocarpaPOPTR_0011s06260.1
ORTHOMCL10(178 genes,8 taxa):Populus trichocarpaPOPTR_0011s06260.2
ORTHOMCL10(178 genes,8 taxa):Populus trichocarpaPOPTR_0011s06340.1
ORTHOMCL10(178 genes,8 taxa):Populus trichocarpaPOPTR_0011s06440.1
ORTHOMCL10(178 genes,8 taxa):Populus trichocarpaPOPTR_0011s06490.1
ORTHOMCL10(178 genes,8 taxa):Populus trichocarpaPOPTR_0011s06540.1
ORTHOMCL10(178 genes,8 taxa):Populus trichocarpaPOPTR_0011s06550.1
ORTHOMCL10(178 genes,8 taxa):Populus trichocarpaPOPTR_0011s06570.1
ORTHOMCL10(178 genes,8 taxa):Populus trichocarpaPOPTR_0011s06620.1
ORTHOMCL10(178 genes,8 taxa):Populus trichocarpaPOPTR_0011s06650.1
ORTHOMCL10(178 genes,8 taxa):Populus trichocarpaPOPTR_0011s06700.1
ORTHOMCL10(178 genes,8 taxa):Populus trichocarpaPOPTR_0011s06710.1
ORTHOMCL10(178 genes,8 taxa):Populus trichocarpaPOPTR_0011s06740.1
ORTHOMCL10(178 genes,8 taxa):Populus trichocarpaPOPTR_0011s06740.2
ORTHOMCL10(178 genes,8 taxa):Populus trichocarpaPOPTR_0011s08020.1
ORTHOMCL10(178 genes,8 taxa):Populus trichocarpaPOPTR_0011s10750.1
ORTHOMCL10(178 genes,8 taxa):Populus trichocarpaPOPTR_0019s01880.1
ORTHOMCL10(178 genes,8 taxa):Populus trichocarpaPOPTR_0019s01890.1
ORTHOMCL10(178 genes,8 taxa):Populus trichocarpaPOPTR_0019s01900.1
ORTHOMCL10(178 genes,8 taxa):Populus trichocarpaPOPTR_0019s01930.1
ORTHOMCL10(178 genes,8 taxa):Populus trichocarpaPOPTR_0019s01950.1
ORTHOMCL10(178 genes,8 taxa):Populus trichocarpaPOPTR_0019s02700.1
ORTHOMCL10(178 genes,8 taxa):Populus trichocarpaPOPTR_0019s02720.1
ORTHOMCL10(178 genes,8 taxa):Populus trichocarpaPOPTR_0019s02740.1
ORTHOMCL10(178 genes,8 taxa):Populus trichocarpaPOPTR_0019s02760.1
ORTHOMCL10(178 genes,8 taxa):Populus trichocarpaPOPTR_0053s00220.1
ORTHOMCL10(178 genes,8 taxa):Populus trichocarpaPOPTR_0073s00200.1
ORTHOMCL10(178 genes,8 taxa):Populus trichocarpaPOPTR_0084s00230.1
ORTHOMCL10(178 genes,8 taxa):Populus trichocarpaPOPTR_0084s00240.1
ORTHOMCL10(178 genes,8 taxa):Populus trichocarpaPOPTR_0122s00210.1
ORTHOMCL10(178 genes,8 taxa):Populus trichocarpaPOPTR_0294s00200.1
ORTHOMCL10(178 genes,8 taxa):Sorghum bicolorSb04g008350.1
ORTHOMCL10(178 genes,8 taxa):Sorghum bicolorSb06g028560.1
ORTHOMCL10(178 genes,8 taxa):Sorghum bicolorSb06g028570.1
ORTHOMCL10(178 genes,8 taxa):Sorghum bicolorSb07g005820.1
ORTHOMCL10(178 genes,8 taxa):Carica papayaevm.TU.contig_37590.1
ORTHOMCL10(178 genes,8 taxa):Carica papayaevm.TU.supercontig_124.13
ORTHOMCL10(178 genes,8 taxa):Carica papayaevm.TU.supercontig_124.16
ORTHOMCL10(178 genes,8 taxa):Carica papayaevm.TU.supercontig_748.2
ORTHOMCL10(178 genes,8 taxa):Carica papayaevm.TU.supercontig_77.35
ORTHOMCL10(178 genes,8 taxa):Carica papayaevm.TU.supercontig_77.40
ORTHOMCL10(178 genes,8 taxa):Carica papayaevm.TU.supercontig_77.43
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:33669749..34646806 (+)A.thalianaChr2:13407492..13716929 (+)45
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:32620404..34617903 (+)B.rapaA04:10557540..11644952 (+)75
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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