Basic Information
Gene Model:Bol013942
Gene Family:Not classificated
Chromosome:C07
Scaffold:Scaffold000181
Sequence:
 | 
Gene Structure
Nucleotide Length:1930 bp
Transcript Length:1785 bp
Protein Length:594 aa
Strand:+
Location:C07: 3242831 : 3244760
Gene CDSs(3): 1-1088 | 1168-1460 | 1527-1930 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPantherPTHR21736VERNALIZATION-INSENS 35 381 1.2e-139Not foundNot found
HMMPantherPTHR21736:SF13VERNALIZATION-INSENS 35 381 1.2e-139Not foundNot found
superfamilySSF49265Fibronectin type III 235 330 7.5e-08IPR008957Fibronectin, type III-like fold
Segsegseg 452 463 NANot foundNot found
Segsegseg 401 411 NANot foundNot found
Segsegseg 10 27 NANot foundNot found
ProfileScanPS50853FN3 236 328 12.192IPR003961Fibronectin, type III
HMMPfamPF00041fn3 235 322 0.0024IPR003961Fibronectin, type III
Gene Ontology
GO TermGO TypeDescription

Note: this gene was not detected its best hit in Swiss-Prot database.

Swiss-Prot
Best HitE_value Description
Q9FIE31e-49VIN3_ARATH Protein VERNALIZATION INSENSITIVE 3 OS=Arabidopsis thaliana GN=VIN3 PE=2 SV=2
TrEMBL
Best HitE_value Description
Q9LHF50.0Q9LHF5_ARATH Emb|CAB52464.1 OS=Arabidopsis thaliana GN=VIL1 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL6241(10 genes,7 taxa):Arabidopsis thalianaAT3G24440.1
ORTHOMCL6241(10 genes,7 taxa):Brassica oleraceaBol013942
ORTHOMCL6241(10 genes,7 taxa):Brassica rapaBra015039
ORTHOMCL6241(10 genes,7 taxa):Vitis viniferaGSVIVT01015423001
ORTHOMCL6241(10 genes,7 taxa):Vitis viniferaGSVIVT01035732001
ORTHOMCL6241(10 genes,7 taxa):Oryza sativaOs05t0145400-01
ORTHOMCL6241(10 genes,7 taxa):Populus trichocarpaPOPTR_0018s06200.1
ORTHOMCL6241(10 genes,7 taxa):Populus trichocarpaPOPTR_0028s00450.1
ORTHOMCL6241(10 genes,7 taxa):Sorghum bicolorSb08g016860.1
ORTHOMCL6241(10 genes,7 taxa):Sorghum bicolorSb09g003500.1
Tandem Duplication
ClusterGene Num.Gene List
Cluster_17342Bol013942 Bol013943 
Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:2811326..3412361 (-)A.thalianaChr3:8801400..8982793 (+)19
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:2811326..3604441 (+)B.rapaA07:8160283..8603358 (-)31
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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