Basic Information
Gene Model:Bol013837
Gene Family:Transcription Factor Families
Chromosome:C05
Scaffold:Scaffold000182
Sequence:
 | 
Gene Structure
Nucleotide Length:1786 bp
Transcript Length:1176 bp
Protein Length:391 aa
Strand:+
Location:C05: 24779743 : 24781528
Gene CDSs(6): 1-252 | 363-487 | 565-823 | 960-1072 | 1203-1518 | 1676-1786 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Gene3DG3DSA:2.40.330.10no description 12 119 2.3e-10Not foundNot found
ProfileScanPS50863B3 354 391 6.724IPR003340Transcriptional factor B3
ProfileScanPS50863B3 226 264 7.246IPR003340Transcriptional factor B3
ProfileScanPS50863B3 23 117 9.869IPR003340Transcriptional factor B3
Segsegseg 17 27 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
Q680D92e-76Y5475_ARATH B3 domain-containing protein At5g25475 OS=Arabidopsis thaliana GN=At5g25475 PE=2 SV=1
TrEMBL
Best HitE_value Description
A5AN702e-09A5AN70_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027623 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL24600(2 genes,2 taxa):Brassica oleraceaBol013837
ORTHOMCL24600(2 genes,2 taxa):Brassica rapaBra022263
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:23729364..24814303 (-)A.thalianaChr3:6119767..6249960 (+)27
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC05:24736736..26272250 (+)B.rapaA06:4371111..5483120 (+)169
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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