Basic Information
Gene Model:Bol013731
Gene Family:Transcription Factor Families
Chromosome:C01
Scaffold:Scaffold000185
Sequence:
 | 
Gene Structure
Nucleotide Length:3918 bp
Transcript Length:2826 bp
Protein Length:941 aa
Strand:+
Location:C01: 1912807 : 1916724
Gene CDSs(4): 1-908 | 1458-2481 | 2929-2976 | 3073-3918 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
superfamilySSF54277CAD & PB1 domains 833 923 3.9e-25Not foundNot found
HMMPfamPF00564PB1 838 923 6.5e-27IPR000270Octicosapeptide/Phox/Bem1p
HMMPfamPF02042RWP-RK 614 665 8.2e-28IPR003035Plant regulator RWP-RK
HMMSmartSM00666no description 838 923 5.5e-27IPR000270Octicosapeptide/Phox/Bem1p
Segsegseg 729 774 NANot foundNot found
Segsegseg 37 45 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription

Note: this gene was not detected its best hit in Swiss-Prot database.

Swiss-Prot
Best HitE_value Description

Note: best hit of this gene was not detected in Swiss-Prot database.

TrEMBL
Best HitE_value Description
O655000.0O65500_ARATH Putative uncharacterized protein AT4g35270 OS=Arabidopsis thaliana GN=F23E12.170 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL375(31 genes,8 taxa):Arabidopsis thalianaAT1G20640.1
ORTHOMCL375(31 genes,8 taxa):Arabidopsis thalianaAT1G76350.1
ORTHOMCL375(31 genes,8 taxa):Arabidopsis thalianaAT2G17150.1
ORTHOMCL375(31 genes,8 taxa):Arabidopsis thalianaAT4G35270.1
ORTHOMCL375(31 genes,8 taxa):Brassica oleraceaBol013731
ORTHOMCL375(31 genes,8 taxa):Brassica oleraceaBol023857
ORTHOMCL375(31 genes,8 taxa):Brassica oleraceaBol025455
ORTHOMCL375(31 genes,8 taxa):Brassica rapaBra002025
ORTHOMCL375(31 genes,8 taxa):Brassica rapaBra009659
ORTHOMCL375(31 genes,8 taxa):Brassica rapaBra011600
ORTHOMCL375(31 genes,8 taxa):Brassica rapaBra012241
ORTHOMCL375(31 genes,8 taxa):Brassica rapaBra015758
ORTHOMCL375(31 genes,8 taxa):Brassica rapaBra016458
ORTHOMCL375(31 genes,8 taxa):Brassica rapaBra017705
ORTHOMCL375(31 genes,8 taxa):Brassica rapaBra025834
ORTHOMCL375(31 genes,8 taxa):Vitis viniferaGSVIVT01013370001
ORTHOMCL375(31 genes,8 taxa):Vitis viniferaGSVIVT01023886001
ORTHOMCL375(31 genes,8 taxa):Oryza sativaOs03t0131100-01
ORTHOMCL375(31 genes,8 taxa):Oryza sativaOs09t0549450-00
ORTHOMCL375(31 genes,8 taxa):Populus trichocarpaPOPTR_0002s01060.1
ORTHOMCL375(31 genes,8 taxa):Populus trichocarpaPOPTR_0002s01060.2
ORTHOMCL375(31 genes,8 taxa):Populus trichocarpaPOPTR_0004s21550.1
ORTHOMCL375(31 genes,8 taxa):Populus trichocarpaPOPTR_0005s27310.1
ORTHOMCL375(31 genes,8 taxa):Populus trichocarpaPOPTR_0009s16790.1
ORTHOMCL375(31 genes,8 taxa):Populus trichocarpaPOPTR_0009s16820.1
ORTHOMCL375(31 genes,8 taxa):Populus trichocarpaPOPTR_0009s16830.1
ORTHOMCL375(31 genes,8 taxa):Populus trichocarpaPOPTR_0016s04220.1
ORTHOMCL375(31 genes,8 taxa):Sorghum bicolorSb01g048290.1
ORTHOMCL375(31 genes,8 taxa):Sorghum bicolorSb02g031970.1
ORTHOMCL375(31 genes,8 taxa):Carica papayaevm.TU.supercontig_20.207
ORTHOMCL375(31 genes,8 taxa):Carica papayaevm.TU.supercontig_26.187
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:1110751..4283482 (-)A.thalianaChr4:14920534..17373930 (+)410
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:1201223..2104238 (+)B.rapaA09:15466454..16093472 (+)26
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
UAT4G352701677733816780824Chr4Subgenome_III(LF)1224
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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