Basic Information
Gene Model:Bol013722
Gene Family:Amino Acid/Auxin Permease AAAP Family
Chromosome:C01
Scaffold:Scaffold000185
Sequence:
 | 
Gene Structure
Nucleotide Length:1881 bp
Transcript Length:1437 bp
Protein Length:478 aa
Strand:+
Location:C01: 1963220 : 1965100
Gene CDSs(5): 1-486 | 595-726 | 814-1226 | 1357-1490 | 1610-1881 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 408 419 NANot foundNot found
Segsegseg 445 467 NANot foundNot found
HMMPantherPTHR22950AMINO ACID TRANSPORT 47 462 8.9e-61Not foundNot found
HMMPfamPF01490Aa_trans 59 464 2.1e-33IPR013057Amino acid transporter, transmembrane
Gene Ontology
GO TermGO TypeDescription

Note: this gene was not detected its best hit in Swiss-Prot database.

Swiss-Prot
Best HitE_value Description
Q84WE90.0LHTL7_ARATH Lysine histidine transporter-like 7 OS=Arabidopsis thaliana GN=At4g35180 PE=2 SV=1
TrEMBL
Best HitE_value Description
B9H1N81e-119B9H1N8_POPTR Lysine/histidine transporter (Fragment) OS=Populus trichocarpa GN=PtrLHT9 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
tet:TTHERM_009414902e-10K14209SLC36A1, PAT1solute carrier family 36 (proton-coupled amino acid transporter), member 1
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL13051(6 genes,4 taxa):Arabidopsis thalianaAT4G35180.1
ORTHOMCL13051(6 genes,4 taxa):Brassica oleraceaBol013722
ORTHOMCL13051(6 genes,4 taxa):Brassica oleraceaBol024266
ORTHOMCL13051(6 genes,4 taxa):Brassica rapaBra011590
ORTHOMCL13051(6 genes,4 taxa):Brassica rapaBra017702
ORTHOMCL13051(6 genes,4 taxa):Carica papayaevm.TU.supercontig_20.138
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:1110751..4283482 (-)A.thalianaChr4:14920534..17373930 (+)410
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:1912807..2356873 (+)B.rapaA10:4866734..5488988 (-)10
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
UAT4G351801673833916740465Chr4Subgenome_III(LF)1224
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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