Basic Information
Gene Model:Bol013691
Gene Family:Not classificated
Chromosome:C01
Scaffold:Scaffold000185
Sequence:
 | 
Gene Structure
Nucleotide Length:429 bp
Transcript Length:429 bp
Protein Length:142 aa
Strand:-
Location:C01: 2155454 : 2155882
Gene CDSs(1): 1-429 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF02519Auxin_inducible 38 100 9.6e-30IPR003676Auxin responsive SAUR protein
Gene Ontology
GO TermGO TypeDescription

Note: this gene was not detected its best hit in Swiss-Prot database.

Swiss-Prot
Best HitE_value Description
P322959e-13ARG7_PHAAU Indole-3-acetic acid-induced protein ARG7 OS=Phaseolus aureus GN=ARG7 PE=2 SV=1
TrEMBL
Best HitE_value Description
O656949e-60O65694_ARATH Putative uncharacterized protein AT4g34750 OS=Arabidopsis thaliana GN=T4L20.330 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT4G347508e-61K14488SAURSAUR family protein
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL19052(3 genes,3 taxa):Arabidopsis thalianaAT4G34750.1
ORTHOMCL19052(3 genes,3 taxa):Brassica oleraceaBol013691
ORTHOMCL19052(3 genes,3 taxa):Brassica rapaBra011559
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:1110751..4283482 (-)A.thalianaChr4:14920534..17373930 (+)410
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:1912807..2356873 (+)B.rapaA10:4866734..5488988 (-)10
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
UAT4G347501657748216578452Chr4Subgenome_III(LF)1224
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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