Basic Information
Gene Model:Bol013690
Gene Family:Not classificated
Chromosome:C01
Scaffold:Scaffold000185
Sequence:
 | 
Gene Structure
Nucleotide Length:1662 bp
Transcript Length:1662 bp
Protein Length:553 aa
Strand:+
Location:C01: 2157507 : 2159168
Gene CDSs(1): 1-1662 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
ProfileScanPS51278GATASE_TYPE_2 78 298 47.410IPR017932Glutamine amidotransferase, type II
superfamilySSF53271PRTase-like 313 539 4.7e-67Not foundNot found
superfamilySSF56235N-terminal nucleophi 78 332 1.5e-86Not foundNot found
Segsegseg 20 54 NANot foundNot found
Gene3DG3DSA:3.60.20.10no description 78 383 1.2e-98Not foundNot found
HMMPantherPTHR11907AMIDOPHOSPHORIBOSYLT 42 530 8.1e-236IPR005854Amidophosphoribosyl transferase
HMMTigrTIGR01134purF: amidophosphori 78 520 2.2e-210IPR005854Amidophosphoribosyl transferase
HMMPfamPF00156Pribosyltran 331 453 9.8e-21IPR000836Phosphoribosyltransferase
HMMPfamPF00310GATase_2 78 273 6.6e-38IPR000583Glutamine amidotransferase, class-II
HMMPIRPIRSF000485Amidophosphoribosylt 67 531 3.8e-216IPR005854Amidophosphoribosyl transferase
Gene Ontology
GO TermGO TypeDescription
GO:0004044 Molecular Function amidophosphoribosyltransferase activity
GO:0008152 Biological Process metabolic process
GO:0009113 Biological Process purine base biosynthetic process
GO:0009116 Biological Process nucleoside metabolic process
Swiss-Prot
Best HitE_value Description
P524180.0PUR1_SOYBN Amidophosphoribosyltransferase, chloroplastic OS=Glycine max GN=PUR1 PE=2 SV=1
TrEMBL
Best HitE_value Description
Q5MAT80.0Q5MAT8_ARATH Chloroplast amidophosphoribosyltransferase OS=Arabidopsis thaliana PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT4G347400.0K00764E2.4.2.14, purFamidophosphoribosyltransferase
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL1500(17 genes,8 taxa):Arabidopsis thalianaAT2G16570.1
ORTHOMCL1500(17 genes,8 taxa):Arabidopsis thalianaAT4G34740.1
ORTHOMCL1500(17 genes,8 taxa):Arabidopsis thalianaAT4G38880.1
ORTHOMCL1500(17 genes,8 taxa):Brassica oleraceaBol013690
ORTHOMCL1500(17 genes,8 taxa):Brassica oleraceaBol028786
ORTHOMCL1500(17 genes,8 taxa):Brassica oleraceaBol031840
ORTHOMCL1500(17 genes,8 taxa):Brassica rapaBra001980
ORTHOMCL1500(17 genes,8 taxa):Brassica rapaBra011558
ORTHOMCL1500(17 genes,8 taxa):Brassica rapaBra011888
ORTHOMCL1500(17 genes,8 taxa):Vitis viniferaGSVIVT01024157001
ORTHOMCL1500(17 genes,8 taxa):Oryza sativaOs05t0430800-01
ORTHOMCL1500(17 genes,8 taxa):Populus trichocarpaPOPTR_0004s17100.1
ORTHOMCL1500(17 genes,8 taxa):Populus trichocarpaPOPTR_0009s12850.1
ORTHOMCL1500(17 genes,8 taxa):Populus trichocarpaPOPTR_0803s00200.1
ORTHOMCL1500(17 genes,8 taxa):Sorghum bicolorSb03g041300.1
ORTHOMCL1500(17 genes,8 taxa):Sorghum bicolorSb09g021310.1
ORTHOMCL1500(17 genes,8 taxa):Carica papayaevm.TU.supercontig_150.4
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:1110751..4283482 (-)A.thalianaChr4:14920534..17373930 (+)410
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:1912807..2356873 (+)B.rapaA10:4866734..5488988 (-)10
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
UAT4G347401657457716576671Chr4Subgenome_III(LF)1224
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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