Basic Information
Gene Model:Bol013659
Gene Family:ARIADNE Gene Families
Chromosome:C01
Scaffold:Scaffold000185
Sequence:
 | 
Gene Structure
Nucleotide Length:3101 bp
Transcript Length:1794 bp
Protein Length:597 aa
Strand:-
Location:C01: 2353773 : 2356873
Gene CDSs(6): 1-129 | 425-457 | 536-827 | 921-1401 | 2163-2860 | 2941-3101 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPantherPTHR11685:SF12RING ZINC FINGER PRO 79 538 0Not foundNot found
HMMPantherPTHR11685ARIADNE RING ZINC FI 79 538 0Not foundNot found
ProfileScanPS50089ZF_RING_2 127 175 9.583IPR001841Zinc finger, RING-type
superfamilySSF57850RING/U-box 279 335 7.9e-14Not foundNot found
superfamilySSF57850RING/U-box 104 219 7.2e-08Not foundNot found
Coilcoilcoiled-coil 441 465 NANot foundNot found
HMMPfamPF01485IBR 198 260 2.4e-23IPR002867Zinc finger, C6HC-type
Segsegseg 115 126 NANot foundNot found
HMMSmartSM00647no description 268 333 0.014IPR002867Zinc finger, C6HC-type
HMMSmartSM00647no description 198 260 2.2e-21IPR002867Zinc finger, C6HC-type
Gene Ontology
GO TermGO TypeDescription
GO:0005515 Molecular Function protein binding
GO:0008270 Molecular Function zinc ion binding
Swiss-Prot
Best HitE_value Description
Q949V60.0ARI1_ARATH Probable E3 ubiquitin-protein ligase ARI1 OS=Arabidopsis thaliana GN=ARI1 PE=2 SV=1
TrEMBL
Best HitE_value Description
B9HRS70.0B9HRS7_POPTR Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_821209 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT2G160900.0K11968ARIH1ariadne-1
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL1287(18 genes,8 taxa):Arabidopsis thalianaAT2G16090.1
ORTHOMCL1287(18 genes,8 taxa):Arabidopsis thalianaAT3G27710.1
ORTHOMCL1287(18 genes,8 taxa):Arabidopsis thalianaAT3G27720.1
ORTHOMCL1287(18 genes,8 taxa):Arabidopsis thalianaAT4G34370.1
ORTHOMCL1287(18 genes,8 taxa):Brassica oleraceaBol013659
ORTHOMCL1287(18 genes,8 taxa):Brassica oleraceaBol031186
ORTHOMCL1287(18 genes,8 taxa):Brassica oleraceaBol031869
ORTHOMCL1287(18 genes,8 taxa):Brassica oleraceaBol032231
ORTHOMCL1287(18 genes,8 taxa):Brassica rapaBra001960
ORTHOMCL1287(18 genes,8 taxa):Brassica rapaBra011524
ORTHOMCL1287(18 genes,8 taxa):Brassica rapaBra033024
ORTHOMCL1287(18 genes,8 taxa):Brassica rapaBra039068
ORTHOMCL1287(18 genes,8 taxa):Vitis viniferaGSVIVT01009627001
ORTHOMCL1287(18 genes,8 taxa):Vitis viniferaGSVIVT01031904001
ORTHOMCL1287(18 genes,8 taxa):Oryza sativaOs03t0233500-01
ORTHOMCL1287(18 genes,8 taxa):Populus trichocarpaPOPTR_0009s11430.1
ORTHOMCL1287(18 genes,8 taxa):Sorghum bicolorSb01g042240.1
ORTHOMCL1287(18 genes,8 taxa):Carica papayaevm.TU.supercontig_62.99
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:1110751..4283482 (-)A.thalianaChr4:14920534..17373930 (+)410
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:1892437..3150322 (+)B.rapaA08:8419255..9414860 (-)85
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
UAT4G343701643433316437309Chr4Subgenome_III(LF)1224
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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