Basic Information
Gene Model:Bol013646
Gene Family:Not classificated
Chromosome:C01
Scaffold:Scaffold000185
Sequence:
 | 
Gene Structure
Nucleotide Length:3071 bp
Transcript Length:1545 bp
Protein Length:514 aa
Strand:-
Location:C01: 2410989 : 2414059
Gene CDSs(8): 1-68 | 255-338 | 655-901 | 975-1043 | 1128-1224 | 1549-1871 | 2336-2749 | 2829-3071 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF00171Aldedh 162 295 4.4e-39IPR015590Aldehyde dehydrogenase
HMMPantherPTHR11699ALDEHYDE DEHYDROGENA 79 510 3.7e-232IPR015590Aldehyde dehydrogenase
HMMPantherPTHR11699:SF15ALDEHYDE DEHYDROGENA 79 510 3.7e-232IPR012394Aldehyde dehydrogenase NAD(P)-dependent
superfamilySSF53720ALDH-like 70 471 8.5e-102IPR016161Aldehyde/histidinol dehydrogenase
HMMPIRPIRSF036492Aldehyde dehydrogena 77 499 4.6e-210IPR012394Aldehyde dehydrogenase NAD(P)-dependent
Gene3DG3DSA:3.40.605.10no description 72 310 3.8e-58IPR016162Aldehyde dehydrogenase, N-terminal
Gene Ontology
GO TermGO TypeDescription
GO:0004030 Molecular Function aldehyde dehydrogenase [NAD(P)+] activity
GO:0006081 Biological Process cellular aldehyde metabolic process
GO:0008152 Biological Process metabolic process
GO:0016491 Molecular Function oxidoreductase activity
GO:0055114 Biological Process oxidation-reduction process
Swiss-Prot
Best HitE_value Description
Q8W0330.0AL3I1_ARATH Aldehyde dehydrogenase family 3 member I1, chloroplastic OS=Arabidopsis thaliana GN=ALDH3I1 PE=2 SV=2
TrEMBL
Best HitE_value Description
Q2PQL80.0Q2PQL8_BRACM Putative aldehyde dehydrogenase OS=Brassica campestris PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT4G342400.0K00128E1.2.1.3aldehyde dehydrogenase (NAD+)
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL869(21 genes,8 taxa):Arabidopsis thalianaAT1G44170.1
ORTHOMCL869(21 genes,8 taxa):Arabidopsis thalianaAT4G34240.1
ORTHOMCL869(21 genes,8 taxa):Brassica oleraceaBol013646
ORTHOMCL869(21 genes,8 taxa):Brassica oleraceaBol013647
ORTHOMCL869(21 genes,8 taxa):Brassica oleraceaBol033409
ORTHOMCL869(21 genes,8 taxa):Brassica oleraceaBol043230
ORTHOMCL869(21 genes,8 taxa):Brassica rapaBra011511
ORTHOMCL869(21 genes,8 taxa):Brassica rapaBra014022
ORTHOMCL869(21 genes,8 taxa):Brassica rapaBra032205
ORTHOMCL869(21 genes,8 taxa):Vitis viniferaGSVIVT01008845001
ORTHOMCL869(21 genes,8 taxa):Vitis viniferaGSVIVT01022356001
ORTHOMCL869(21 genes,8 taxa):Oryza sativaOs11t0186200-01
ORTHOMCL869(21 genes,8 taxa):Populus trichocarpaPOPTR_0001s42150.1
ORTHOMCL869(21 genes,8 taxa):Populus trichocarpaPOPTR_0001s42150.2
ORTHOMCL869(21 genes,8 taxa):Populus trichocarpaPOPTR_0001s42150.3
ORTHOMCL869(21 genes,8 taxa):Populus trichocarpaPOPTR_0002s08230.1
ORTHOMCL869(21 genes,8 taxa):Populus trichocarpaPOPTR_0005s07090.1
ORTHOMCL869(21 genes,8 taxa):Populus trichocarpaPOPTR_0005s20150.1
ORTHOMCL869(21 genes,8 taxa):Sorghum bicolorSb05g005470.1
ORTHOMCL869(21 genes,8 taxa):Sorghum bicolorSb08g004840.1
ORTHOMCL869(21 genes,8 taxa):Carica papayaevm.TU.supercontig_64.101
Tandem Duplication
ClusterGene Num.Gene List
Cluster_11182Bol013646 Bol013647 
Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:1110751..4283482 (-)A.thalianaChr4:14920534..17373930 (+)410
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:1892437..3150322 (+)B.rapaA08:8419255..9414860 (-)85
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
UAT4G342401638962016392084Chr4Subgenome_III(LF)1224
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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