Basic Information
Gene Model:Bol013512
Gene Family:Not classificated
Chromosome:C04
Scaffold:Scaffold000186
Sequence:
 | 
Gene Structure
Nucleotide Length:1319 bp
Transcript Length:672 bp
Protein Length:223 aa
Strand:-
Location:C04: 19664500 : 19665818
Gene CDSs(5): 1-150 | 248-310 | 398-518 | 613-754 | 1124-1319 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF00957Synaptobrevin 129 217 4e-41IPR001388Synaptobrevin
HMMPantherPTHR21136SNARE PROTEINS 12 221 1.8e-133Not foundNot found
HMMPantherPTHR21136:SF8VAMP-7 12 221 1.8e-133Not foundNot found
superfamilySSF64356SNARE-like 7 124 5.9e-32IPR011012Longin-like
Segsegseg 195 213 NANot foundNot found
ProfileScanPS50859LONGIN 12 116 28.283IPR010908Longin
ProfileScanPS50892V_SNARE 132 192 19.385IPR001388Synaptobrevin
PatternScanPS00417SYNAPTOBREVIN 150 169 NAIPR001388Synaptobrevin
Gene3DG3DSA:1.20.5.110no description 117 196 1.5e-25Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0006810 Biological Process transport
GO:0016021 Cellular Component integral to membrane
GO:0016192 Biological Process vesicle-mediated transport
Swiss-Prot
Best HitE_value Description
P471921e-127VA722_ARATH Vesicle-associated membrane protein 722 OS=Arabidopsis thaliana GN=VAMP722 PE=2 SV=2
TrEMBL
Best HitE_value Description
Q2V4361e-113Q2V436_ARATH AT2G33120 protein OS=Arabidopsis thaliana GN=AT2G33120 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT2G326701e-110K08511ATVAMP72vesicle-associated membrane protein 72
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL15492(4 genes,4 taxa):Arabidopsis thalianaAT2G33120.2
ORTHOMCL15492(4 genes,4 taxa):Brassica oleraceaBol013512
ORTHOMCL15492(4 genes,4 taxa):Brassica rapaBra005523
ORTHOMCL15492(4 genes,4 taxa):Vitis viniferaGSVIVT01028579001
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:18992445..21825121 (+)A.thalianaChr2:13722427..14926591 (+)187
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:19201735..21825121 (+)B.rapaA05:21833239..23208305 (-)183
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
JAT2G331201404346914045543Chr2Subgenome_III(LF)205
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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