Basic Information
Gene Model:Bol013498
Gene Family:Not classificated
Gene Structure
Nucleotide Length:2946 bp
Transcript Length:681 bp
Protein Length:226 aa
Location:C04: 19454090 : 19457035
Gene CDSs(5): 1-299 | 395-488 | 2454-2511 | 2617-2660 | 2761-2946 |
Protein Sequence Features
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF03162Y_phosphatase2 64 226 8.4e-91IPR004861Protein-tyrosine phosphatase, SIW14-like
superfamilySSF52799(Phosphotyrosine pro 48 216 4.7e-27Not foundNot found
PatternScanPS00383TYR_PHOSPHATASE_1 159 169 NAIPR016130Protein-tyrosine phosphatase, active site
Gene3DG3DSA: description 63 213 1.6e-57Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0004725 Molecular Function protein tyrosine phosphatase activity
GO:0016311 Biological Process dephosphorylation
GO:0016791 Molecular Function phosphatase activity
Best HitE_value Description
Q9ZVN42e-90Y1500_ARATH Probable tyrosine-protein phosphatase At1g05000 OS=Arabidopsis thaliana GN=At1g05000 PE=1 SV=1
Best HitE_value Description
O487695e-94O48769_ARATH Putative uncharacterized protein At2g32960 OS=Arabidopsis thaliana GN=At2g32960 PE=2 SV=1
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
OrthoMCL GroupSpeciesGene List
ORTHOMCL2765(13 genes,8 taxa):Arabidopsis thalianaAT1G05000.2
ORTHOMCL2765(13 genes,8 taxa):Arabidopsis thalianaAT4G03960.1
ORTHOMCL2765(13 genes,8 taxa):Brassica oleraceaBol012075
ORTHOMCL2765(13 genes,8 taxa):Brassica oleraceaBol013498
ORTHOMCL2765(13 genes,8 taxa):Brassica oleraceaBol040945
ORTHOMCL2765(13 genes,8 taxa):Brassica rapaBra015379
ORTHOMCL2765(13 genes,8 taxa):Brassica rapaBra029480
ORTHOMCL2765(13 genes,8 taxa):Vitis viniferaGSVIVT01030509001
ORTHOMCL2765(13 genes,8 taxa):Oryza sativaOs09t0135700-01
ORTHOMCL2765(13 genes,8 taxa):Populus trichocarpaPOPTR_0004s00440.1
ORTHOMCL2765(13 genes,8 taxa):Populus trichocarpaPOPTR_0011s00950.1
ORTHOMCL2765(13 genes,8 taxa):Sorghum bicolorSb10g006850.1
ORTHOMCL2765(13 genes,8 taxa):Carica papayaevm.TU.supercontig_132.32
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:18992445..21825121 (+)A.thalianaChr2:13722427..14926591 (+)187
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:19201735..21825121 (+)B.rapaA05:21833239..23208305 (-)183
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.