Basic Information
Gene Model:Bol013419
Gene Family:Not classificated
Chromosome:Cun
Scaffold:Scaffold000187
Sequence:
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Gene Structure
Nucleotide Length:2830 bp
Transcript Length:2187 bp
Protein Length:728 aa
Strand:-
Location:Scaffold000187: 630517 : 633346
Gene CDSs(9): 1-255 | 359-466 | 560-832 | 912-998 | 1068-1259 | 1328-1456 | 1539-1652 | 1728-2266 | 2341-2830 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Gene3DG3DSA:3.40.50.300no description 112 331 2.6e-27Not foundNot found
superfamilySSF52540P-loop containing nu 112 344 1e-38Not foundNot found
HMMPantherPTHR19241ATP-BINDING CASSETTE 1 713 0Not foundNot found
HMMPantherPTHR19241:SF20ATP-BINDING CASSETTE 1 713 0Not foundNot found
ProfileScanPS50893ABC_TRANSPORTER_2 112 354 14.506IPR003439ABC transporter-like
HMMPfamPF00005ABC_tran 142 330 9.5e-28IPR003439ABC transporter-like
HMMPfamPF01061ABC2_membrane 439 651 1.6e-36IPR013525ABC-2 type transporter
Segsegseg 485 502 NANot foundNot found
Segsegseg 6 28 NANot foundNot found
HMMSmartSM00382no description 141 331 7.8e-11IPR003593ATPase, AAA+ type, core
Gene Ontology
GO TermGO TypeDescription
GO:0000166 Molecular Function nucleotide binding
GO:0005524 Molecular Function ATP binding
GO:0016020 Cellular Component membrane
GO:0016887 Molecular Function ATPase activity
GO:0017111 Molecular Function nucleoside-triphosphatase activity
Swiss-Prot
Best HitE_value Description
Q9ZUU90.0AB3G_ARATH ABC transporter G family member 3 OS=Arabidopsis thaliana GN=ABCG3 PE=1 SV=1
TrEMBL
Best HitE_value Description
B9SCH20.0B9SCH2_RICCO ATP-binding cassette transporter, putative OS=Ricinus communis GN=RCOM_0472860 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
rno:3123828e-54K05681ABCG2ATP-binding cassette, subfamily G (WHITE), member 2
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL4675(11 genes,8 taxa):Arabidopsis thalianaAT2G28070.1
ORTHOMCL4675(11 genes,8 taxa):Brassica oleraceaBol013419
ORTHOMCL4675(11 genes,8 taxa):Brassica oleraceaBol026393
ORTHOMCL4675(11 genes,8 taxa):Brassica rapaBra011981
ORTHOMCL4675(11 genes,8 taxa):Brassica rapaBra034385
ORTHOMCL4675(11 genes,8 taxa):Vitis viniferaGSVIVT01031516001
ORTHOMCL4675(11 genes,8 taxa):Oryza sativaOs03t0859500-01
ORTHOMCL4675(11 genes,8 taxa):Populus trichocarpaPOPTR_0004s22390.1
ORTHOMCL4675(11 genes,8 taxa):Populus trichocarpaPOPTR_0009s01380.1
ORTHOMCL4675(11 genes,8 taxa):Sorghum bicolorSb01g000400.1
ORTHOMCL4675(11 genes,8 taxa):Carica papayaevm.TU.supercontig_1.17
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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