Basic Information
Gene Model:Bol013391
Gene Family:Transcription Factor Families
Chromosome:Cun
Scaffold:Scaffold000187
Sequence:
 | 
Gene Structure
Nucleotide Length:2384 bp
Transcript Length:2112 bp
Protein Length:703 aa
Strand:-
Location:Scaffold000187: 148240 : 150623
Gene CDSs(4): 1-82 | 170-235 | 337-1211 | 1296-2384 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Gene3DG3DSA:2.40.330.10no description 99 228 9.8e-39Not foundNot found
ProfileScanPS50962IAA_ARF 591 670 21.166IPR011525Aux/IAA-ARF-dimerisation
ProfileScanPS50863B3 112 214 13.239IPR003340Transcriptional factor B3
Coilcoilcoiled-coil 557 578 NANot foundNot found
HMMPfamPF06507Auxin_resp 280 363 2.8e-48IPR010525Auxin response factor
HMMPfamPF02362B3 111 216 2.4e-32IPR003340Transcriptional factor B3
Segsegseg 463 475 NANot foundNot found
Segsegseg 479 489 NANot foundNot found
Segsegseg 563 579 NANot foundNot found
Segsegseg 216 240 NANot foundNot found
Segsegseg 271 285 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0005634 Cellular Component nucleus
GO:0006355 Biological Process regulation of transcription, DNA-dependent
GO:0009725 Biological Process response to hormone stimulus
GO:0045449 Biological Process regulation of transcription
GO:0046983 Molecular Function protein dimerization activity
Swiss-Prot
Best HitE_value Description
Q9SKN50.0ARFJ_ARATH Auxin response factor 10 OS=Arabidopsis thaliana GN=ARF10 PE=2 SV=1
TrEMBL
Best HitE_value Description
C0SV660.0C0SV66_ARATH Putative uncharacterized protein At2g28350 (Fragment) OS=Arabidopsis thaliana GN=At2g28350 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
pop:POPTR_8368291e-76K14486K14486, ARFauxin response factor
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL494(27 genes,8 taxa):Arabidopsis thalianaAT2G28350.1
ORTHOMCL494(27 genes,8 taxa):Arabidopsis thalianaAT4G30080.1
ORTHOMCL494(27 genes,8 taxa):Brassica oleraceaBol013391
ORTHOMCL494(27 genes,8 taxa):Brassica oleraceaBol020966
ORTHOMCL494(27 genes,8 taxa):Brassica oleraceaBol033635
ORTHOMCL494(27 genes,8 taxa):Brassica rapaBra011162
ORTHOMCL494(27 genes,8 taxa):Brassica rapaBra011955
ORTHOMCL494(27 genes,8 taxa):Brassica rapaBra024109
ORTHOMCL494(27 genes,8 taxa):Vitis viniferaGSVIVT01016266001
ORTHOMCL494(27 genes,8 taxa):Vitis viniferaGSVIVT01025198001
ORTHOMCL494(27 genes,8 taxa):Vitis viniferaGSVIVT01025691001
ORTHOMCL494(27 genes,8 taxa):Oryza sativaOs02t0628600-01
ORTHOMCL494(27 genes,8 taxa):Oryza sativaOs06t0685700-01
ORTHOMCL494(27 genes,8 taxa):Oryza sativaOs10t0479900-01
ORTHOMCL494(27 genes,8 taxa):Populus trichocarpaPOPTR_0004s22130.1
ORTHOMCL494(27 genes,8 taxa):Populus trichocarpaPOPTR_0006s12930.1
ORTHOMCL494(27 genes,8 taxa):Populus trichocarpaPOPTR_0008s03890.1
ORTHOMCL494(27 genes,8 taxa):Populus trichocarpaPOPTR_0009s02020.1
ORTHOMCL494(27 genes,8 taxa):Populus trichocarpaPOPTR_0010s23000.1
ORTHOMCL494(27 genes,8 taxa):Populus trichocarpaPOPTR_0016s09150.1
ORTHOMCL494(27 genes,8 taxa):Populus trichocarpaPOPTR_0848s00200.1
ORTHOMCL494(27 genes,8 taxa):Sorghum bicolorSb01g019130.1
ORTHOMCL494(27 genes,8 taxa):Sorghum bicolorSb04g026610.1
ORTHOMCL494(27 genes,8 taxa):Sorghum bicolorSb06g022810.1
ORTHOMCL494(27 genes,8 taxa):Sorghum bicolorSb10g027790.1
ORTHOMCL494(27 genes,8 taxa):Carica papayaevm.TU.supercontig_53.86
ORTHOMCL494(27 genes,8 taxa):Carica papayaevm.TU.supercontig_65.4
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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