Basic Information
Gene Model:Bol013321
Gene Family:Not classificated
Chromosome:C06
Scaffold:Scaffold000188
Sequence:
 | 
Gene Structure
Nucleotide Length:1883 bp
Transcript Length:1437 bp
Protein Length:478 aa
Strand:+
Location:C06: 18975421 : 18977303
Gene CDSs(4): 1-906 | 987-1175 | 1268-1480 | 1755-1883 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF03552Cellulose_synt 165 376 3.2e-29IPR005150Cellulose synthase
HMMPfamPF03552Cellulose_synt 45 137 4e-26IPR005150Cellulose synthase
Segsegseg 388 402 NANot foundNot found
Segsegseg 365 382 NANot foundNot found
Segsegseg 268 284 NANot foundNot found
Segsegseg 147 158 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0016020 Cellular Component membrane
GO:0016760 Molecular Function cellulose synthase (UDP-forming) activity
GO:0030244 Biological Process cellulose biosynthetic process
Swiss-Prot
Best HitE_value Description
Q8VZK90.0CSLE1_ARATH Cellulose synthase-like protein E1 OS=Arabidopsis thaliana GN=CSLE1 PE=1 SV=1
TrEMBL
Best HitE_value Description
B9S9W01e-173B9S9W0_RICCO Cellulose synthase, putative OS=Ricinus communis GN=RCOM_0522740 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
vvi:1002485123e-58K10999CESAcellulose synthase A
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL303(34 genes,8 taxa):Arabidopsis thalianaAT1G55850.1
ORTHOMCL303(34 genes,8 taxa):Brassica oleraceaBol001571
ORTHOMCL303(34 genes,8 taxa):Brassica oleraceaBol013320
ORTHOMCL303(34 genes,8 taxa):Brassica oleraceaBol013321
ORTHOMCL303(34 genes,8 taxa):Brassica rapaBra030830
ORTHOMCL303(34 genes,8 taxa):Brassica rapaBra037098
ORTHOMCL303(34 genes,8 taxa):Vitis viniferaGSVIVT01004272001
ORTHOMCL303(34 genes,8 taxa):Vitis viniferaGSVIVT01004458001
ORTHOMCL303(34 genes,8 taxa):Vitis viniferaGSVIVT01006760001
ORTHOMCL303(34 genes,8 taxa):Vitis viniferaGSVIVT01006761001
ORTHOMCL303(34 genes,8 taxa):Vitis viniferaGSVIVT01006763001
ORTHOMCL303(34 genes,8 taxa):Vitis viniferaGSVIVT01006764001
ORTHOMCL303(34 genes,8 taxa):Vitis viniferaGSVIVT01006766001
ORTHOMCL303(34 genes,8 taxa):Vitis viniferaGSVIVT01007038001
ORTHOMCL303(34 genes,8 taxa):Vitis viniferaGSVIVT01007039001
ORTHOMCL303(34 genes,8 taxa):Vitis viniferaGSVIVT01007042001
ORTHOMCL303(34 genes,8 taxa):Vitis viniferaGSVIVT01007043001
ORTHOMCL303(34 genes,8 taxa):Vitis viniferaGSVIVT01007333001
ORTHOMCL303(34 genes,8 taxa):Vitis viniferaGSVIVT01014703001
ORTHOMCL303(34 genes,8 taxa):Vitis viniferaGSVIVT01014705001
ORTHOMCL303(34 genes,8 taxa):Oryza sativaOs02t0725300-01
ORTHOMCL303(34 genes,8 taxa):Oryza sativaOs02t0725300-04
ORTHOMCL303(34 genes,8 taxa):Oryza sativaOs09t0478100-01
ORTHOMCL303(34 genes,8 taxa):Oryza sativaOs09t0478100-02
ORTHOMCL303(34 genes,8 taxa):Oryza sativaOs09t0478100-03
ORTHOMCL303(34 genes,8 taxa):Populus trichocarpaPOPTR_0001s37770.1
ORTHOMCL303(34 genes,8 taxa):Populus trichocarpaPOPTR_0006s00610.1
ORTHOMCL303(34 genes,8 taxa):Populus trichocarpaPOPTR_0006s00620.1
ORTHOMCL303(34 genes,8 taxa):Sorghum bicolorSb02g027570.1
ORTHOMCL303(34 genes,8 taxa):Sorghum bicolorSb02g027610.1
ORTHOMCL303(34 genes,8 taxa):Sorghum bicolorSb04g029420.1
ORTHOMCL303(34 genes,8 taxa):Carica papayaevm.TU.supercontig_12.124
ORTHOMCL303(34 genes,8 taxa):Carica papayaevm.TU.supercontig_27.228
ORTHOMCL303(34 genes,8 taxa):Carica papayaevm.TU.supercontig_27.229
Tandem Duplication
ClusterGene Num.Gene List
Cluster_11772Bol013320 Bol013321 
Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC06:18631158..18992831 (-)A.thalianaChr3:4214617..4493831 (+)15
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC06:18295989..19160557 (+)B.rapaA08:18107716..18939938 (-)31
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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