Basic Information
Gene Model:Bol013320
Gene Family:Not classificated
Chromosome:C06
Scaffold:Scaffold000188
Sequence:
 | 
Gene Structure
Nucleotide Length:1797 bp
Transcript Length:1395 bp
Protein Length:464 aa
Strand:+
Location:C06: 18977611 : 18979407
Gene CDSs(4): 1-225 | 325-516 | 565-777 | 1033-1797 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF03552Cellulose_synt 378 446 3.2e-18IPR005150Cellulose synthase
HMMPfamPF03552Cellulose_synt 256 349 2e-28IPR005150Cellulose synthase
HMMPfamPF03552Cellulose_synt 67 194 6.8e-46IPR005150Cellulose synthase
Segsegseg 359 371 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0016020 Cellular Component membrane
GO:0016760 Molecular Function cellulose synthase (UDP-forming) activity
GO:0030244 Biological Process cellulose biosynthetic process
Swiss-Prot
Best HitE_value Description
Q8VZK90.0CSLE1_ARATH Cellulose synthase-like protein E1 OS=Arabidopsis thaliana GN=CSLE1 PE=1 SV=1
TrEMBL
Best HitE_value Description
A7Q9A11e-153A7Q9A1_VITVI Chromosome chr19 scaffold_66, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00033394001 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
vvi:1002485127e-75K10999CESAcellulose synthase A
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL303(34 genes,8 taxa):Arabidopsis thalianaAT1G55850.1
ORTHOMCL303(34 genes,8 taxa):Brassica oleraceaBol001571
ORTHOMCL303(34 genes,8 taxa):Brassica oleraceaBol013320
ORTHOMCL303(34 genes,8 taxa):Brassica oleraceaBol013321
ORTHOMCL303(34 genes,8 taxa):Brassica rapaBra030830
ORTHOMCL303(34 genes,8 taxa):Brassica rapaBra037098
ORTHOMCL303(34 genes,8 taxa):Vitis viniferaGSVIVT01004272001
ORTHOMCL303(34 genes,8 taxa):Vitis viniferaGSVIVT01004458001
ORTHOMCL303(34 genes,8 taxa):Vitis viniferaGSVIVT01006760001
ORTHOMCL303(34 genes,8 taxa):Vitis viniferaGSVIVT01006761001
ORTHOMCL303(34 genes,8 taxa):Vitis viniferaGSVIVT01006763001
ORTHOMCL303(34 genes,8 taxa):Vitis viniferaGSVIVT01006764001
ORTHOMCL303(34 genes,8 taxa):Vitis viniferaGSVIVT01006766001
ORTHOMCL303(34 genes,8 taxa):Vitis viniferaGSVIVT01007038001
ORTHOMCL303(34 genes,8 taxa):Vitis viniferaGSVIVT01007039001
ORTHOMCL303(34 genes,8 taxa):Vitis viniferaGSVIVT01007042001
ORTHOMCL303(34 genes,8 taxa):Vitis viniferaGSVIVT01007043001
ORTHOMCL303(34 genes,8 taxa):Vitis viniferaGSVIVT01007333001
ORTHOMCL303(34 genes,8 taxa):Vitis viniferaGSVIVT01014703001
ORTHOMCL303(34 genes,8 taxa):Vitis viniferaGSVIVT01014705001
ORTHOMCL303(34 genes,8 taxa):Oryza sativaOs02t0725300-01
ORTHOMCL303(34 genes,8 taxa):Oryza sativaOs02t0725300-04
ORTHOMCL303(34 genes,8 taxa):Oryza sativaOs09t0478100-01
ORTHOMCL303(34 genes,8 taxa):Oryza sativaOs09t0478100-02
ORTHOMCL303(34 genes,8 taxa):Oryza sativaOs09t0478100-03
ORTHOMCL303(34 genes,8 taxa):Populus trichocarpaPOPTR_0001s37770.1
ORTHOMCL303(34 genes,8 taxa):Populus trichocarpaPOPTR_0006s00610.1
ORTHOMCL303(34 genes,8 taxa):Populus trichocarpaPOPTR_0006s00620.1
ORTHOMCL303(34 genes,8 taxa):Sorghum bicolorSb02g027570.1
ORTHOMCL303(34 genes,8 taxa):Sorghum bicolorSb02g027610.1
ORTHOMCL303(34 genes,8 taxa):Sorghum bicolorSb04g029420.1
ORTHOMCL303(34 genes,8 taxa):Carica papayaevm.TU.supercontig_12.124
ORTHOMCL303(34 genes,8 taxa):Carica papayaevm.TU.supercontig_27.228
ORTHOMCL303(34 genes,8 taxa):Carica papayaevm.TU.supercontig_27.229
Tandem Duplication
ClusterGene Num.Gene List
Cluster_11772Bol013320 Bol013321 
Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC06:18975421..19277258 (-)A.thalianaChr4:8551244..8726669 (+)11
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC06:18295989..19160557 (+)B.rapaA08:18107716..18939938 (-)31
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
CAT1G558502087669920879482Chr1Subgenome_II48
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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