Basic Information
Gene Model:Bol013313
Gene Family:Not classificated
Chromosome:C06
Scaffold:Scaffold000188
Sequence:
 | 
Gene Structure
Nucleotide Length:2432 bp
Transcript Length:1506 bp
Protein Length:501 aa
Strand:-
Location:C06: 19000520 : 19002951
Gene CDSs(6): 1-83 | 181-277 | 392-715 | 818-949 | 1055-1735 | 2244-2432 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF02854MIF4G 23 255 2.1e-13IPR003890MIF4G-like, type 3
Coilcoilcoiled-coil 437 458 NANot foundNot found
Coilcoilcoiled-coil 325 346 NANot foundNot found
Coilcoilcoiled-coil 395 423 NANot foundNot found
Coilcoilcoiled-coil 283 318 NANot foundNot found
HMMPantherPTHR23253EUKARYOTIC TRANSLATI 27 196 1.4e-05Not foundNot found
HMMPantherPTHR23253:SF7EUKARYOTIC TRANSLATI 27 196 1.4e-05Not foundNot found
HMMSmartSM00543no description 23 259 2.4e-11IPR003890MIF4G-like, type 3
BlastProDomPD936484Q806D4_9VIRU_Q806D4; 488 491 0.0006Not foundNot found
BlastProDomPD936484Q806D4_9VIRU_Q806D4; 204 215 0.0006Not foundNot found
BlastProDomPD968187Q30KS2_CANFA_Q30KS2; 216 487 9e-05Not foundNot found
Gene3DG3DSA:1.25.40.180no description 12 209 8.3e-11IPR016021MIF4-like, type 1/2/3
superfamilySSF48371ARM repeat 14 221 4.8e-18IPR016024Armadillo-type fold
Gene Ontology
GO TermGO TypeDescription
GO:0005488 Molecular Function binding
GO:0005515 Molecular Function protein binding
GO:0016070 Biological Process RNA metabolic process
Swiss-Prot
Best HitE_value Description
Q9SGT21e-123PUB58_ARATH Putative U-box domain-containing protein 58 OS=Arabidopsis thaliana GN=PUB58 PE=3 SV=2
TrEMBL
Best HitE_value Description
B9HB412e-12B9HB41_POPTR Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_561350 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
pop:POPTR_5613502e-13K03260eIF-4F, EIF4Gtranslation initiation factor eIF-4F
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL17671(3 genes,3 taxa):Arabidopsis thalianaAT1G56040.1
ORTHOMCL17671(3 genes,3 taxa):Brassica oleraceaBol013313
ORTHOMCL17671(3 genes,3 taxa):Brassica rapaBra037092
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC06:18975421..19277258 (-)A.thalianaChr4:8551244..8726669 (+)11
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC06:18295989..19160557 (+)B.rapaA08:18107716..18939938 (-)31
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
CAT1G560402096035620962334Chr1Subgenome_II48
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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