Basic Information
Gene Model:Bol013260
Gene Family:Transcription Factor Families
Chromosome:C08
Scaffold:Scaffold000189
Sequence:
 | 
Gene Structure
Nucleotide Length:1927 bp
Transcript Length:882 bp
Protein Length:293 aa
Strand:-
Location:C08: 20514042 : 20515968
Gene CDSs(5): 1-150 | 668-894 | 978-1062 | 1372-1458 | 1595-1927 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 260 276 NANot foundNot found
Segsegseg 76 101 NANot foundNot found
HMMPfamPF00538Linker_histone 124 192 9.3e-07IPR005818Histone H1/H5
HMMPfamPF00249Myb_DNA-binding 5 57 5e-08IPR014778Myb, DNA-binding
superfamilySSF46785"Winged helix" DNA-b 119 205 3.2e-14Not foundNot found
superfamilySSF46689Homeodomain-like 1 68 5.3e-09IPR009057Homeodomain-like
ProfileScanPS51294HTH_MYB 1 62 16.046IPR017930Myb-type HTH DNA-binding domain
HMMPantherPTHR11467HISTONE H1/H5 125 184 2.1e-08Not foundNot found
HMMSmartSM00717no description 4 59 6.3e-09IPR001005SANT, DNA-binding
HMMSmartSM00526no description 121 187 1.3e-15IPR005818Histone H1/H5
Gene3DG3DSA:1.10.10.60no description 1 68 3.4e-14IPR012287Homeodomain-related
Gene3DG3DSA:1.10.10.10no description 118 203 2.4e-07IPR011991Winged helix repressor DNA-binding
Gene Ontology
GO TermGO TypeDescription
GO:0000786 Cellular Component nucleosome
GO:0003677 Molecular Function DNA binding
GO:0005634 Cellular Component nucleus
GO:0006334 Biological Process nucleosome assembly
GO:0045449 Biological Process regulation of transcription
Swiss-Prot
Best HitE_value Description
P234445e-07H1_MAIZE Histone H1 OS=Zea mays PE=2 SV=2
TrEMBL
Best HitE_value Description
Q8GWZ52e-94Q8GWZ5_ARATH Putative myb-related DNA-binding protein OS=Arabidopsis thaliana GN=At1g17520/F1L3_25 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT1G175206e-96K09422MYBPmyb proto-oncogene protein, plant
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL17402(3 genes,3 taxa):Arabidopsis thalianaAT1G17520.1
ORTHOMCL17402(3 genes,3 taxa):Brassica oleraceaBol013260
ORTHOMCL17402(3 genes,3 taxa):Brassica rapaBra016598
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:20493552..21271335 (+)A.thalianaChr1:6002912..6698824 (+)90
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:20493552..21271335 (+)B.rapaA08:2498163..2926216 (-)82
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
AAT1G1752060246366027385Chr1Subgenome_II83
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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