Basic Information
Gene Model:Bol013258
Gene Family:Protein Kinase Gene Families
Chromosome:C08
Scaffold:Scaffold000189
Sequence:
 | 
Gene Structure
Nucleotide Length:2937 bp
Transcript Length:1389 bp
Protein Length:462 aa
Strand:-
Location:C08: 20518536 : 20521472
Gene CDSs(6): 1-7 | 637-734 | 843-964 | 1052-1267 | 1339-1516 | 2170-2937 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 195 206 NANot foundNot found
Segsegseg 139 151 NANot foundNot found
HMMPfamPF00069Pkinase 297 453 2.3e-30IPR017442Serine/threonine-protein kinase-like domain
Coilcoilcoiled-coil 247 278 NANot foundNot found
superfamilySSF56112Protein kinase-like 267 458 1.1e-47IPR011009Protein kinase-like domain
HMMPantherPTHR23258SERINE-THREONINE PRO 109 462 6.7e-147Not foundNot found
ProfileScanPS50011PROTEIN_KINASE_DOM 297 462 27.821IPR000719Protein kinase, catalytic domain
HMMPantherPTHR23258:SF203SERINE THREONINE KIN 109 462 6.7e-147Not foundNot found
PatternScanPS00108PROTEIN_KINASE_ST 415 427 NAIPR008271Serine/threonine-protein kinase, active site
HMMSmartSM00219no description 297 462 1.1e-08IPR020635Tyrosine-protein kinase, subgroup, catalytic domain
HMMSmartSM00220no description 297 453 3.5e-07IPR002290Serine/threonine-protein kinase domain
Gene3DG3DSA:3.30.200.20no description 295 430 1.4e-20Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0004672 Molecular Function protein kinase activity
GO:0004674 Molecular Function protein serine/threonine kinase activity
GO:0005524 Molecular Function ATP binding
GO:0006468 Biological Process protein phosphorylation
Swiss-Prot
Best HitE_value Description
Q9SW112e-59PUB35_ARATH U-box domain-containing protein 35 OS=Arabidopsis thaliana GN=PUB35 PE=1 SV=2
TrEMBL
Best HitE_value Description
Q681A50.0Q681A5_ARATH Putative uncharacterized protein At1g17540 OS=Arabidopsis thaliana GN=At1g17540 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT5G389903e-34K04733IRAK4interleukin-1 receptor-associated kinase 4
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL11173(7 genes,3 taxa):Arabidopsis thalianaAT1G17540.1
ORTHOMCL11173(7 genes,3 taxa):Arabidopsis thalianaAT1G72760.1
ORTHOMCL11173(7 genes,3 taxa):Brassica oleraceaBol013258
ORTHOMCL11173(7 genes,3 taxa):Brassica rapaBra008047
ORTHOMCL11173(7 genes,3 taxa):Brassica rapaBra016035
ORTHOMCL11173(7 genes,3 taxa):Brassica rapaBra016596
ORTHOMCL11173(7 genes,3 taxa):Brassica rapaBra025965
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:20493552..21271335 (+)A.thalianaChr1:6002912..6698824 (+)90
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:20514042..21266945 (+)B.rapaA09:4062401..4532946 (+)36
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
AAT1G1754060292776032754Chr1Subgenome_II83
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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