Basic Information
Gene Model:Bol013169
Gene Family:Not classificated
Chromosome:C08
Scaffold:Scaffold000189
Sequence:
 | 
Gene Structure
Nucleotide Length:1128 bp
Transcript Length:639 bp
Protein Length:212 aa
Strand:-
Location:C08: 21068143 : 21069270
Gene CDSs(5): 1-148 | 231-307 | 513-590 | 697-767 | 864-1128 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF00072Response_reg 26 148 2.9e-23IPR001789Signal transduction response regulator, receiver region
HMMSmartSM00448no description 24 151 1.3e-19IPR001789Signal transduction response regulator, receiver region
Segsegseg 173 191 NANot foundNot found
Gene3DG3DSA:3.40.50.2300no description 18 165 3e-23Not foundNot found
superfamilySSF52172CheY-like 21 153 4.4e-27IPR011006CheY-like
ProfileScanPS50110RESPONSE_REGULATORY 25 152 27.011IPR001789Signal transduction response regulator, receiver region
HMMPantherPTHR23283SENSOR HISTIDINE KIN 24 156 4.6e-16Not foundNot found
HMMPantherPTHR23283:SF40TWO-COMPONENT SENSOR 24 156 4.6e-16Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0000156 Molecular Function two-component response regulator activity
GO:0000160 Biological Process two-component signal transduction system (phosphorelay)
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
Q9ZWS72e-88ARR7_ARATH Two-component response regulator ARR7 OS=Arabidopsis thaliana GN=ARR7 PE=1 SV=1
TrEMBL
Best HitE_value Description
Q2HIJ63e-87Q2HIJ6_ARATH At1g19050 OS=Arabidopsis thaliana PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT1G190503e-88K14492ARR-Atwo-component response regulator ARR-A family
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL24534(2 genes,2 taxa):Brassica oleraceaBol013169
ORTHOMCL24534(2 genes,2 taxa):Brassica rapaBra016526
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:20643441..21268736 (+)A.thalianaChr1:27700050..28195933 (+)28
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC08:20514042..21266945 (+)B.rapaA09:4062401..4532946 (+)36
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
AAT1G1905065778336579178Chr1Subgenome_II83
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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