Basic Information
Gene Model:Bol013145
Gene Family:Not classificated
Chromosome:C01
Scaffold:Scaffold000190
Sequence:
 | 
Gene Structure
Nucleotide Length:3375 bp
Transcript Length:909 bp
Protein Length:302 aa
Strand:+
Location:C01: 14361317 : 14364691
Gene CDSs(6): 1-185 | 370-432 | 534-650 | 2104-2491 | 2567-2718 | 3372-3375 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF00892DUF6 19 146 1.9e-10IPR000620Protein of unknown function DUF6, transmembrane
Segsegseg 11 21 NANot foundNot found
superfamilySSF103481Multidrug resistance 44 147 4.7e-07Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0016020 Cellular Component membrane
Swiss-Prot
Best HitE_value Description
Q6J1635e-285NG4_PINTA Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1
TrEMBL
Best HitE_value Description
Q8GYT01e-126Q8GYT0_ARATH Putative uncharacterized protein At4g01450/F11O4_14 OS=Arabidopsis thaliana GN=At4g01450/F11O4_14 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL24529(2 genes,1 taxa):Brassica oleraceaBol013142
ORTHOMCL24529(2 genes,1 taxa):Brassica oleraceaBol013145
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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