Basic Information
Gene Model:Bol013105
Gene Family:Sulfurtransferasese/Rhodanese Gene Family
Chromosome:C01
Scaffold:Scaffold000190
Sequence:
 | 
Gene Structure
Nucleotide Length:1124 bp
Transcript Length:684 bp
Protein Length:227 aa
Strand:-
Location:C01: 13966159 : 13967282
Gene CDSs(6): 1-121 | 189-291 | 386-524 | 606-698 | 798-844 | 944-1124 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
ProfileScanPS50206RHODANESE_3 90 223 20.188IPR001763Rhodanese-like
superfamilySSF52821Rhodanese/Cell cycle 63 224 1.3e-24IPR001763Rhodanese-like
Segsegseg 34 54 NANot foundNot found
Segsegseg 10 20 NANot foundNot found
Gene3DG3DSA:3.40.250.10no description 61 223 7.8e-22IPR001763Rhodanese-like
HMMPfamPF00581Rhodanese 82 217 1e-08IPR001763Rhodanese-like
HMMSmartSM00450no description 80 220 1.7e-27IPR001763Rhodanese-like
Gene Ontology
GO TermGO TypeDescription

Note: this gene was not detected its best hit in Swiss-Prot database.

Swiss-Prot
Best HitE_value Description
P276267e-08DIN1_RAPSA Senescence-associated protein DIN1 OS=Raphanus sativus GN=DIN1 PE=2 SV=1
TrEMBL
Best HitE_value Description
Q94A651e-110Q94A65_ARATH AT4g27700/T29A15_190 OS=Arabidopsis thaliana GN=At4g27700 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL5123(11 genes,8 taxa):Arabidopsis thalianaAT4G27700.1
ORTHOMCL5123(11 genes,8 taxa):Brassica oleraceaBol013105
ORTHOMCL5123(11 genes,8 taxa):Brassica rapaBra026314
ORTHOMCL5123(11 genes,8 taxa):Vitis viniferaGSVIVT01038606001
ORTHOMCL5123(11 genes,8 taxa):Oryza sativaOs09t0530000-01
ORTHOMCL5123(11 genes,8 taxa):Oryza sativaOs09t0530000-02
ORTHOMCL5123(11 genes,8 taxa):Populus trichocarpaPOPTR_0012s02760.1
ORTHOMCL5123(11 genes,8 taxa):Populus trichocarpaPOPTR_0012s02760.2
ORTHOMCL5123(11 genes,8 taxa):Populus trichocarpaPOPTR_0015s01040.1
ORTHOMCL5123(11 genes,8 taxa):Sorghum bicolorSb02g030550.1
ORTHOMCL5123(11 genes,8 taxa):Carica papayaevm.TU.supercontig_3.126
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:7418478..14237322 (+)A.thalianaChr4:11126151..13975908 (+)479
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:11854750..14004199 (+)B.rapaA10:9475493..11621884 (+)51
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
UAT4G277001382637413827823Chr4Subgenome_III(LF)1224
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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