Basic Information
Gene Model:Bol013021
Gene Family:U-box Gene Family
Gene Structure
Nucleotide Length:2607 bp
Transcript Length:1164 bp
Protein Length:387 aa
Location:C03: 54964336 : 54966942
Gene CDSs(7): 1-154 | 657-760 | 911-1041 | 1195-1299 | 1389-1542 | 1817-2146 | 2422-2607 |
Protein Sequence Features
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Gene3DG3DSA: description 312 386 1.2e-24Not foundNot found
HMMSmartSM00504no description 319 382 4.5e-28IPR003613U box domain
Segsegseg 297 313 NANot foundNot found
HMMPfamPF04564U-box 315 387 1.8e-27IPR003613U box domain
Coilcoilcoiled-coil 225 263 NANot foundNot found
superfamilySSF57850RING/U-box 312 387 3.3e-19Not foundNot found
HMMPantherPTHR23258:SF448RECEPTOR PROTEIN KIN 280 385 8.7e-33Not foundNot found
HMMPantherPTHR23258SERINE-THREONINE PRO 280 385 8.7e-33Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0000151 Cellular Component ubiquitin ligase complex
GO:0004842 Molecular Function ubiquitin-protein ligase activity
GO:0016567 Biological Process protein ubiquitination
Best HitE_value Description
Q8GXQ72e-98PUB56_ARATH U-box domain-containing protein 56 OS=Arabidopsis thaliana GN=PUB56 PE=2 SV=1
Best HitE_value Description
B9SX071e-30B9SX07_RICCO Receptor protein kinase, putative OS=Ricinus communis GN=RCOM_1259000 PE=4 SV=1
Best HitE_valueKOEC or Symbol Description
vcn:VOLCADRAFT_678403e-08K09561STUB1, CHIPSTIP1 homology and U-box containing protein 1
Gene Cluster
OrthoMCL GroupSpeciesGene List
ORTHOMCL19671(3 genes,2 taxa):Brassica oleraceaBol000206
ORTHOMCL19671(3 genes,2 taxa):Brassica oleraceaBol013021
ORTHOMCL19671(3 genes,2 taxa):Brassica rapaBra010318
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:52960962..55163450 (-)A.thalianaChr4:14391938..16215594 (+)147
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:53766885..55163450 (+)B.rapaA08:3909915..4704238 (+)85
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.