Basic Information
Gene Model:Bol013001
Gene Family:Not classificated
Chromosome:C03
Scaffold:Scaffold000191
Sequence:
 | 
Gene Structure
Nucleotide Length:1923 bp
Transcript Length:1923 bp
Protein Length:640 aa
Strand:+
Location:C03: 54718513 : 54720435
Gene CDSs(1): 1-1923 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Gene3DG3DSA:2.60.40.30no description 329 421 0.00088IPR008957Fibronectin, type III-like fold
HMMPfamPF00041fn3 327 411 0.0018IPR003961Fibronectin, type III
superfamilySSF49265Fibronectin type III 316 431 2.5e-09IPR008957Fibronectin, type III-like fold
Segsegseg 439 451 NANot foundNot found
Segsegseg 479 493 NANot foundNot found
HMMSmartSM00060no description 327 413 0.00087IPR003961Fibronectin, type III
HMMPantherPTHR21736VERNALIZATION-INSENS 1 461 1.1e-197Not foundNot found
HMMPantherPTHR21736:SF13VERNALIZATION-INSENS 1 461 1.1e-197Not foundNot found
ProfileScanPS50853FN3 326 421 12.088IPR003961Fibronectin, type III
Gene Ontology
GO TermGO TypeDescription

Note: this gene was not detected its best hit in Swiss-Prot database.

Swiss-Prot
Best HitE_value Description
Q9FIE31e-119VIN3_ARATH Protein VERNALIZATION INSENSITIVE 3 OS=Arabidopsis thaliana GN=VIN3 PE=2 SV=2
TrEMBL
Best HitE_value Description
Q9SUM40.0Q9SUM4_ARATH Putative uncharacterized protein AT4g30200 OS=Arabidopsis thaliana GN=VIL2 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL1834(16 genes,8 taxa):Arabidopsis thalianaAT4G30200.2
ORTHOMCL1834(16 genes,8 taxa):Brassica oleraceaBol013001
ORTHOMCL1834(16 genes,8 taxa):Brassica oleraceaBol020979
ORTHOMCL1834(16 genes,8 taxa):Brassica oleraceaBol033646
ORTHOMCL1834(16 genes,8 taxa):Brassica rapaBra010297
ORTHOMCL1834(16 genes,8 taxa):Brassica rapaBra011173
ORTHOMCL1834(16 genes,8 taxa):Brassica rapaBra024097
ORTHOMCL1834(16 genes,8 taxa):Vitis viniferaGSVIVT01029220001
ORTHOMCL1834(16 genes,8 taxa):Oryza sativaOs02t0152500-01
ORTHOMCL1834(16 genes,8 taxa):Oryza sativaOs08t0220600-01
ORTHOMCL1834(16 genes,8 taxa):Populus trichocarpaPOPTR_0006s18340.1
ORTHOMCL1834(16 genes,8 taxa):Populus trichocarpaPOPTR_0006s18340.2
ORTHOMCL1834(16 genes,8 taxa):Populus trichocarpaPOPTR_0018s09890.1
ORTHOMCL1834(16 genes,8 taxa):Sorghum bicolorSb04g003700.1
ORTHOMCL1834(16 genes,8 taxa):Sorghum bicolorSb07g006110.1
ORTHOMCL1834(16 genes,8 taxa):Carica papayaevm.TU.supercontig_1021.1
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:52960962..55163450 (-)A.thalianaChr4:14391938..16215594 (+)147
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:53766885..55163450 (+)B.rapaA08:3909915..4704238 (+)85
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
UAT4G302001478663314790503Chr4Subgenome_II147
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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