Basic Information
Gene Model:Bol012991
Gene Family:Not classificated
Chromosome:C03
Scaffold:Scaffold000191
Sequence:
 | 
Gene Structure
Nucleotide Length:1922 bp
Transcript Length:1104 bp
Protein Length:367 aa
Strand:-
Location:C03: 54586456 : 54588377
Gene CDSs(7): 1-187 | 271-422 | 577-735 | 829-1069 | 1152-1268 | 1369-1437 | 1744-1922 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF00892DUF6 18 152 5.6e-10IPR000620Protein of unknown function DUF6, transmembrane
HMMPfamPF00892DUF6 193 322 3e-12IPR000620Protein of unknown function DUF6, transmembrane
superfamilySSF103481Multidrug resistance 43 157 4e-06Not foundNot found
superfamilySSF103481Multidrug resistance 218 327 6.1e-10Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0016020 Cellular Component membrane
Swiss-Prot
Best HitE_value Description
Q6J1633e-605NG4_PINTA Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1
TrEMBL
Best HitE_value Description
Q9M0B81e-179Q9M0B8_ARATH Nodulin-like protein OS=Arabidopsis thaliana GN=AT4g30420 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL11860(7 genes,7 taxa):Arabidopsis thalianaAT4G30420.1
ORTHOMCL11860(7 genes,7 taxa):Brassica oleraceaBol012991
ORTHOMCL11860(7 genes,7 taxa):Brassica rapaBra010284
ORTHOMCL11860(7 genes,7 taxa):Vitis viniferaGSVIVT01023731001
ORTHOMCL11860(7 genes,7 taxa):Oryza sativaOs09t0426500-01
ORTHOMCL11860(7 genes,7 taxa):Populus trichocarpaPOPTR_0018s10840.1
ORTHOMCL11860(7 genes,7 taxa):Sorghum bicolorSb02g025210.1
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:52960962..55163450 (-)A.thalianaChr4:14391938..16215594 (+)147
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:53766885..55163450 (+)B.rapaA08:3909915..4704238 (+)85
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
UAT4G304201487706914878914Chr4Subgenome_II147
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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