Basic Information
Gene Model:Bol012950
Gene Family:Not classificated
Chromosome:Cun
Scaffold:Scaffold000192
Sequence:
 | 
Gene Structure
Nucleotide Length:2607 bp
Transcript Length:1461 bp
Protein Length:486 aa
Strand:+
Location:Scaffold000192: 959005 : 961611
Gene CDSs(14): 1-187 | 349-440 | 516-585 | 664-782 | 867-963 | 1066-1145 | 1268-1462 | 1538-1621 | 1684-1744 | 1814-1874 | 1945-2038 | 2133-2223 | 2302-2384 | 2461-2607 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMTigrTIGR00235udk: uridine kinase 51 261 5.8e-94IPR000764Uridine kinase
Gene3DG3DSA:3.40.50.300no description 58 262 1e-68Not foundNot found
superfamilySSF53271PRTase-like 257 485 1e-58Not foundNot found
superfamilySSF52540P-loop containing nu 58 262 4.4e-64Not foundNot found
HMMPfamPF00485PRK 61 248 2.3e-59IPR006083Phosphoribulokinase/uridine kinase
Segsegseg 186 208 NANot foundNot found
Segsegseg 27 56 NANot foundNot found
HMMPantherPTHR10285URIDINE KINASE RELAT 67 486 5.2e-226Not foundNot found
HMMPantherPTHR10285:SF6URIDINE CYTIDINE KIN 67 486 5.2e-226IPR000764Uridine kinase
Gene Ontology
GO TermGO TypeDescription
GO:0005524 Molecular Function ATP binding
GO:0008152 Biological Process metabolic process
GO:0016301 Molecular Function kinase activity
GO:0016773 Molecular Function phosphotransferase activity, alcohol group as acceptor
Swiss-Prot
Best HitE_value Description
Q91YL31e-117UCKL1_MOUSE Uridine-cytidine kinase-like 1 OS=Mus musculus GN=Uckl1 PE=1 SV=1
TrEMBL
Best HitE_value Description
Q9FKS00.0Q9FKS0_ARATH Uridine kinase OS=Arabidopsis thaliana GN=uprt1 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT5G408700.0K00876E2.7.1.48, udkuridine kinase
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL253(37 genes,8 taxa):Arabidopsis thalianaAT1G55810.1
ORTHOMCL253(37 genes,8 taxa):Arabidopsis thalianaAT3G27190.1
ORTHOMCL253(37 genes,8 taxa):Arabidopsis thalianaAT3G27440.1
ORTHOMCL253(37 genes,8 taxa):Arabidopsis thalianaAT4G26510.1
ORTHOMCL253(37 genes,8 taxa):Arabidopsis thalianaAT5G40870.1
ORTHOMCL253(37 genes,8 taxa):Brassica oleraceaBol006254
ORTHOMCL253(37 genes,8 taxa):Brassica oleraceaBol012950
ORTHOMCL253(37 genes,8 taxa):Brassica oleraceaBol031146
ORTHOMCL253(37 genes,8 taxa):Brassica oleraceaBol032223
ORTHOMCL253(37 genes,8 taxa):Brassica oleraceaBol039644
ORTHOMCL253(37 genes,8 taxa):Brassica oleraceaBol042865
ORTHOMCL253(37 genes,8 taxa):Brassica rapaBra002854
ORTHOMCL253(37 genes,8 taxa):Brassica rapaBra025256
ORTHOMCL253(37 genes,8 taxa):Brassica rapaBra025537
ORTHOMCL253(37 genes,8 taxa):Brassica rapaBra026427
ORTHOMCL253(37 genes,8 taxa):Brassica rapaBra030832
ORTHOMCL253(37 genes,8 taxa):Brassica rapaBra032986
ORTHOMCL253(37 genes,8 taxa):Brassica rapaBra039077
ORTHOMCL253(37 genes,8 taxa):Vitis viniferaGSVIVT01008517001
ORTHOMCL253(37 genes,8 taxa):Vitis viniferaGSVIVT01014838001
ORTHOMCL253(37 genes,8 taxa):Vitis viniferaGSVIVT01032376001
ORTHOMCL253(37 genes,8 taxa):Oryza sativaOs02t0273000-01
ORTHOMCL253(37 genes,8 taxa):Oryza sativaOs08t0530000-01
ORTHOMCL253(37 genes,8 taxa):Oryza sativaOs09t0505800-01
ORTHOMCL253(37 genes,8 taxa):Oryza sativaOs11t0265000-01
ORTHOMCL253(37 genes,8 taxa):Populus trichocarpaPOPTR_0001s33950.1
ORTHOMCL253(37 genes,8 taxa):Populus trichocarpaPOPTR_0001s47190.1
ORTHOMCL253(37 genes,8 taxa):Populus trichocarpaPOPTR_0001s47190.2
ORTHOMCL253(37 genes,8 taxa):Populus trichocarpaPOPTR_0011s16790.1
ORTHOMCL253(37 genes,8 taxa):Populus trichocarpaPOPTR_0017s09850.1
ORTHOMCL253(37 genes,8 taxa):Populus trichocarpaPOPTR_0017s10740.1
ORTHOMCL253(37 genes,8 taxa):Sorghum bicolorSb02g029240.1
ORTHOMCL253(37 genes,8 taxa):Sorghum bicolorSb04g000210.1
ORTHOMCL253(37 genes,8 taxa):Sorghum bicolorSb07g026320.1
ORTHOMCL253(37 genes,8 taxa):Sorghum bicolorSb08g023067.1
ORTHOMCL253(37 genes,8 taxa):Carica papayaevm.TU.supercontig_12.103
ORTHOMCL253(37 genes,8 taxa):Carica papayaevm.TU.supercontig_130.72
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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