Basic Information
Gene Model:Bol012883
Gene Family:Not classificated
Chromosome:Cun
Scaffold:Scaffold000192
Sequence:
 | 
Gene Structure
Nucleotide Length:1571 bp
Transcript Length:1101 bp
Protein Length:366 aa
Strand:-
Location:Scaffold000192: 197143 : 198713
Gene CDSs(6): 1-157 | 303-454 | 531-689 | 777-1026 | 1115-1294 | 1369-1571 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 45 60 NANot foundNot found
Segsegseg 75 88 NANot foundNot found
Segsegseg 164 179 NANot foundNot found
Segsegseg 296 305 NANot foundNot found
superfamilySSF103481Multidrug resistance 51 163 0.00078Not foundNot found
superfamilySSF103481Multidrug resistance 227 338 1.1e-08Not foundNot found
HMMPfamPF00892DUF6 27 158 9.5e-08IPR000620Protein of unknown function DUF6, transmembrane
Gene Ontology
GO TermGO TypeDescription
GO:0016020 Cellular Component membrane
Swiss-Prot
Best HitE_value Description
Q6J1638e-355NG4_PINTA Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1
TrEMBL
Best HitE_value Description
Q9FL091e-155Q9FL09_ARATH Nodulin-like protein OS=Arabidopsis thaliana PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL8317(9 genes,8 taxa):Arabidopsis thalianaAT4G38440.1
ORTHOMCL8317(9 genes,8 taxa):Brassica oleraceaBol012883
ORTHOMCL8317(9 genes,8 taxa):Brassica oleraceaBol012884
ORTHOMCL8317(9 genes,8 taxa):Brassica rapaBra025599
ORTHOMCL8317(9 genes,8 taxa):Vitis viniferaGSVIVT01023952001
ORTHOMCL8317(9 genes,8 taxa):Oryza sativaOs06t0574400-01
ORTHOMCL8317(9 genes,8 taxa):Populus trichocarpaPOPTR_0009s14190.1
ORTHOMCL8317(9 genes,8 taxa):Sorghum bicolorSb10g022700.1
ORTHOMCL8317(9 genes,8 taxa):Carica papayaevm.TU.supercontig_20.132
Tandem Duplication
ClusterGene Num.Gene List
Cluster_295Bol012882 Bol012883 Bol012884 Bol012885 Bol012886 
Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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