Basic Information
Gene Model:Bol012875
Gene Family:U-box Gene Family
Chromosome:Cun
Scaffold:Scaffold000192
Sequence:
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Gene Structure
Nucleotide Length:1665 bp
Transcript Length:1665 bp
Protein Length:554 aa
Strand:+
Location:Scaffold000192: 121054 : 122718
Gene CDSs(1): 1-1665 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
superfamilySSF57850RING/U-box 57 135 5.5e-11Not foundNot found
superfamilySSF48371ARM repeat 170 554 4e-41IPR016024Armadillo-type fold
HMMSmartSM00185no description 311 351 8IPR000225Armadillo
HMMSmartSM00185no description 352 392 45IPR000225Armadillo
HMMSmartSM00185no description 432 475 24IPR000225Armadillo
HMMSmartSM00185no description 270 310 40IPR000225Armadillo
HMMSmartSM00504no description 64 128 1.5e-10IPR003613U box domain
Gene3DG3DSA:1.25.10.10no description 255 525 7e-28IPR011989Armadillo-like helical
Gene3DG3DSA:3.30.40.10no description 57 135 9.2e-17Not foundNot found
Segsegseg 281 293 NANot foundNot found
Segsegseg 38 58 NANot foundNot found
Segsegseg 200 210 NANot foundNot found
Segsegseg 229 245 NANot foundNot found
HMMPfamPF00514Arm 311 351 3.9e-06IPR000225Armadillo
HMMPfamPF00514Arm 352 392 0.0043IPR000225Armadillo
HMMPfamPF04564U-box 60 89 6.6e-15IPR003613U box domain
HMMPantherPTHR23315:SF7ANKYRIN-REPEAT-ARM D 245 413 8.4e-08Not foundNot found
HMMPantherPTHR23315BETA CATENIN-RELATED 245 413 8.4e-08Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0000151 Cellular Component ubiquitin ligase complex
GO:0004842 Molecular Function ubiquitin-protein ligase activity
GO:0005488 Molecular Function binding
GO:0016567 Biological Process protein ubiquitination
Swiss-Prot
Best HitE_value Description
Q9FL170.0PUB40_ARATH U-box domain-containing protein 40 OS=Arabidopsis thaliana GN=PUB40 PE=2 SV=1
TrEMBL
Best HitE_value Description
A7PMG11e-159A7PMG1_VITVI Chromosome chr14 scaffold_21, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00020808001 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ago:AGOS_AEL048W1e-10K08332VAC8vacuolar protein 8
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL13153(6 genes,6 taxa):Arabidopsis thalianaAT5G40140.1
ORTHOMCL13153(6 genes,6 taxa):Brassica oleraceaBol012875
ORTHOMCL13153(6 genes,6 taxa):Brassica rapaBra025605
ORTHOMCL13153(6 genes,6 taxa):Vitis viniferaGSVIVT01032537001
ORTHOMCL13153(6 genes,6 taxa):Populus trichocarpaPOPTR_0017s10990.1
ORTHOMCL13153(6 genes,6 taxa):Carica papayaevm.TU.supercontig_14.84
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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