Basic Information
Gene Model:Bol012861
Gene Family:Transcription Factor Families
Chromosome:C02
Scaffold:Scaffold000193
Sequence:
 | 
Gene Structure
Nucleotide Length:2039 bp
Transcript Length:1143 bp
Protein Length:380 aa
Strand:-
Location:C02: 943845 : 945883
Gene CDSs(8): 1-314 | 381-523 | 758-871 | 965-1132 | 1203-1293 | 1397-1481 | 1554-1697 | 1956-2039 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Gene3DG3DSA:2.40.330.10no description 34 163 1.4e-32Not foundNot found
ProfileScanPS50863B3 47 149 12.943IPR003340Transcriptional factor B3
HMMPfamPF02362B3 46 148 3.2e-25IPR003340Transcriptional factor B3
HMMPfamPF06507Auxin_resp 174 229 6e-19IPR010525Auxin response factor
Segsegseg 287 298 NANot foundNot found
Segsegseg 323 330 NANot foundNot found
Segsegseg 349 363 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0005634 Cellular Component nucleus
GO:0006355 Biological Process regulation of transcription, DNA-dependent
GO:0009725 Biological Process response to hormone stimulus
GO:0045449 Biological Process regulation of transcription
Swiss-Prot
Best HitE_value Description
Q9LQE37e-84ARFO_ARATH Putative auxin response factor 15 OS=Arabidopsis thaliana GN=ARF15 PE=3 SV=2
TrEMBL
Best HitE_value Description
C0SUZ19e-79C0SUZ1_ARATH Putative uncharacterized protein At1g34310 (Fragment) OS=Arabidopsis thaliana GN=At1g34310 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
pop:POPTR_8283211e-58K14486K14486, ARFauxin response factor
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List

Note: the orthologous genes of this gene was not detected by OrthoMCL software with default parameters.

Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:51843..3301726 (+)B.rapaA03:27430617..29478138 (+)140
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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