Basic Information
Gene Model:Bol012794
Gene Family:Not classificated
Chromosome:C02
Scaffold:Scaffold000193
Sequence:
 | 
Gene Structure
Nucleotide Length:1549 bp
Transcript Length:1086 bp
Protein Length:361 aa
Strand:+
Location:C02: 86878 : 88426
Gene CDSs(5): 1-204 | 384-674 | 776-893 | 986-1209 | 1301-1549 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMSmartSM00332no description 41 331 1e-60IPR001932Protein phosphatase 2C-related
Gene3DG3DSA:3.60.40.10no description 44 337 4.3e-62IPR001932Protein phosphatase 2C-related
superfamilySSF81606Protein serine/threo 26 338 4.9e-60IPR001932Protein phosphatase 2C-related
HMMPfamPF00481PP2C 155 310 1.6e-30IPR014045Protein phosphatase 2C, N-terminal
Segsegseg 301 313 NANot foundNot found
HMMPantherPTHR13832PROTEIN PHOSPHATASE 25 359 5.1e-126IPR015655Protein phosphatase 2C
HMMPantherPTHR13832:SF94PROTEIN PHOSPHATASE 25 359 5.1e-126Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0003824 Molecular Function catalytic activity
Swiss-Prot
Best HitE_value Description
Q6NKS10.0P2C65_ARATH Probable protein phosphatase 2C 65 OS=Arabidopsis thaliana GN=At5g01700 PE=2 SV=1
TrEMBL
Best HitE_value Description
B9SL271e-108B9SL27_RICCO Protein phosphatase-2c, putative OS=Ricinus communis GN=RCOM_0849360 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
tet:TTHERM_012434302e-30K01102E3.1.3.43, PDPpyruvate dehydrogenase phosphatase
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL1382(18 genes,8 taxa):Arabidopsis thalianaAT5G01700.2
ORTHOMCL1382(18 genes,8 taxa):Arabidopsis thalianaAT5G01710.1
ORTHOMCL1382(18 genes,8 taxa):Brassica oleraceaBol005670
ORTHOMCL1382(18 genes,8 taxa):Brassica oleraceaBol012794
ORTHOMCL1382(18 genes,8 taxa):Brassica rapaBra005670
ORTHOMCL1382(18 genes,8 taxa):Brassica rapaBra009643
ORTHOMCL1382(18 genes,8 taxa):Brassica rapaBra028908
ORTHOMCL1382(18 genes,8 taxa):Vitis viniferaGSVIVT01024625001
ORTHOMCL1382(18 genes,8 taxa):Vitis viniferaGSVIVT01030261001
ORTHOMCL1382(18 genes,8 taxa):Oryza sativaOs07t0692401-00
ORTHOMCL1382(18 genes,8 taxa):Populus trichocarpaPOPTR_0006s10580.1
ORTHOMCL1382(18 genes,8 taxa):Populus trichocarpaPOPTR_0006s10590.1
ORTHOMCL1382(18 genes,8 taxa):Populus trichocarpaPOPTR_0016s13580.1
ORTHOMCL1382(18 genes,8 taxa):Populus trichocarpaPOPTR_0019s14470.1
ORTHOMCL1382(18 genes,8 taxa):Sorghum bicolorSb01g038110.1
ORTHOMCL1382(18 genes,8 taxa):Sorghum bicolorSb02g043860.1
ORTHOMCL1382(18 genes,8 taxa):Carica papayaevm.TU.supercontig_5.239
ORTHOMCL1382(18 genes,8 taxa):Carica papayaevm.TU.supercontig_5.240
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:35653..294462 (-)A.thalianaChr5:5917..325516 (+)27
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:51843..3301726 (+)B.rapaA03:27430617..29478138 (+)140
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
RAT5G01700260726262582Chr5Subgenome_I25
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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