Basic Information
Gene Model:Bol012783
Gene Family:Not classificated
Chromosome:C02
Scaffold:Scaffold000194_P2
Sequence:
 | 
Gene Structure
Nucleotide Length:1113 bp
Transcript Length:1113 bp
Protein Length:370 aa
Strand:+
Location:C02: 42486051 : 42487163
Gene CDSs(1): 1-1113 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
ProfileScanPS50089ZF_RING_2 123 165 12.947IPR001841Zinc finger, RING-type
HMMPantherPTHR22765RING FINGER AND PROT 30 182 1.2e-18Not foundNot found
HMMPantherPTHR22765:SF1SPERIZIN, RING ZINC 30 182 1.2e-18Not foundNot found
Gene3DG3DSA:3.30.40.10no description 116 170 8.5e-16Not foundNot found
HMMSmartSM00184no description 123 164 2.6e-06IPR001841Zinc finger, RING-type
Segsegseg 250 261 NANot foundNot found
Segsegseg 46 51 NANot foundNot found
HMMPfamPF00097zf-C3HC4 123 164 3.9e-13IPR018957Zinc finger, C3HC4 RING-type
superfamilySSF57850RING/U-box 116 170 6.1e-18Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0005515 Molecular Function protein binding
GO:0008270 Molecular Function zinc ion binding
Swiss-Prot
Best HitE_value Description
Q8LGA51e-143ATL5H_ARATH RING-H2 finger protein ATL5H OS=Arabidopsis thaliana GN=ATL5H PE=2 SV=2
TrEMBL
Best HitE_value Description
Q0WUY71e-142Q0WUY7_ARATH RING-H2 zinc finger protein-like OS=Arabidopsis thaliana GN=At5g27420 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
oaa:1000854691e-10K11982RNF115_126E3 ubiquitin-protein ligase RNF115/126
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL19335(3 genes,3 taxa):Arabidopsis thalianaAT5G27420.1
ORTHOMCL19335(3 genes,3 taxa):Brassica oleraceaBol012783
ORTHOMCL19335(3 genes,3 taxa):Brassica rapaBra020591
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:42327711..42615332 (+)A.thalianaChr5:9553438..9961264 (+)22
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:42227769..42794280 (+)B.rapaA06:12810860..13209498 (-)23
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


logo